Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28c04
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29443-5|CAA82572.1| 182|Caenorhabditis elegans Hypothetical pr... 81 7e-16
L26545-1|AAA20081.1| 182|Caenorhabditis elegans CYT-1 protein. 81 7e-16
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 29 3.8
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 29 3.8
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 29 3.8
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF039048-1|AAB94237.2| 480|Caenorhabditis elegans Cell division... 27 8.7
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z29443-5|CAA82572.1| 182|Caenorhabditis elegans Hypothetical
protein T07C4.7 protein.
Length = 182
Score = 81.0 bits (191), Expect = 7e-16
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 250 NRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNL 429
NRP++PHLT+Y QLT +LS HR +G ++ GIG V D + ++ I NL
Sbjct: 51 NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDFIRSWNL 110
Query: 430 SPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGL-SIKEVYSTGY 564
A + K IIA P+ +H NGIR L +D AKG+ ++ ++Y +GY
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGY 156
>L26545-1|AAA20081.1| 182|Caenorhabditis elegans CYT-1 protein.
Length = 182
Score = 81.0 bits (191), Expect = 7e-16
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 250 NRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNL 429
NRP++PHLT+Y QLT +LS HR +G ++ GIG V D + ++ I NL
Sbjct: 51 NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDFIRSWNL 110
Query: 430 SPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGL-SIKEVYSTGY 564
A + K IIA P+ +H NGIR L +D AKG+ ++ ++Y +GY
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGY 156
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 443 KVAGERLSPSIMVM*CEI--SFCDTNA 369
KV GERLSP I C++ SFC +N+
Sbjct: 151 KVCGERLSPQIACDHCDLRTSFCKSNS 177
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 443 KVAGERLSPSIMVM*CEI--SFCDTNA 369
KV GERLSP I C++ SFC +N+
Sbjct: 151 KVCGERLSPQIACDHCDLRTSFCKSNS 177
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 443 KVAGERLSPSIMVM*CEI--SFCDTNA 369
KV GERLSP I C++ SFC +N+
Sbjct: 151 KVCGERLSPQIACDHCDLRTSFCKSNS 177
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 484 GSLMVQQLSLLPRIKWQVKD*VLQSWLCNVKYHFVTLMPLYQVRWHMLSTSFQ 326
G++ +++ +L K KD L N+KYHF + + L +LS+SFQ
Sbjct: 1212 GTVFIEEKNLEELWKSTEKDVYTCHSLSNLKYHFESEITLNSSFMFLLSSSFQ 1264
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 484 GSLMVQQLSLLPRIKWQVKD*VLQSWLCNVKYHFVTLMPLYQVRWHMLSTSFQ 326
G++ +++ +L K KD L N+KYHF + + L +LS+SFQ
Sbjct: 1212 GTVFIEEKNLEELWKSTEKDVYTCHSLSNLKYHFESEITLNSSFMFLLSSSFQ 1264
>AF039048-1|AAB94237.2| 480|Caenorhabditis elegans Cell division
cycle related protein25.2 protein.
Length = 480
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 342 CQHHSSCSMCDREHSSQLE 286
CQ H+ C M D+EH+ +L+
Sbjct: 353 CQPHAYCEMHDKEHTMELK 371
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 85 CTRLGSRSVLASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKE 219
C + G+R ++ +P + + N+ Q S P T + +PP +
Sbjct: 32 CQQCGNRRIVQQYRSYPQKKFNFNFEQFFSRFPGFTSPQRQPPSQ 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,827
Number of Sequences: 27780
Number of extensions: 283893
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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