Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b24
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5WDE3 Cluster: Integrase, catalytic region; n=11; Mora...    35   2.4  
UniRef50_A2GF95 Cluster: Putative uncharacterized protein; n=4; ...    35   2.4  
UniRef50_A7Q397 Cluster: Chromosome chr12 scaffold_47, whole gen...    33   5.5  
UniRef50_A5K321 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q0DK66 Cluster: Os05g0188700 protein; n=1; Oryza sativa...    33   7.2  

>UniRef50_A5WDE3 Cluster: Integrase, catalytic region; n=11;
           Moraxellaceae|Rep: Integrase, catalytic region -
           Psychrobacter sp. PRwf-1
          Length = 284

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 329 TQPLYPERRLNHRILKEDSTTVSTYYIH*IKEEKSLYPERRK---ITVS*RKNQPLYP 493
           TQ  Y   RL H+ L      +S Y +  IK+E  +Y +R K   +T     N+P+YP
Sbjct: 53  TQQSYGHERL-HQHLTSQGHDISLYMVRQIKQEHGIYCKRHKRSKVTTDSNHNKPVYP 109


>UniRef50_A2GF95 Cluster: Putative uncharacterized protein; n=4;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 712

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 22/88 (25%), Positives = 42/88 (47%)
 Frame = +3

Query: 240 SPYLEENKRNH*VCPEPVRAILHPPYPERRLNHCILKEDSTTVS*KKTQPLYPHTISTES 419
           S  LEE+ R H +  E  +A+ + P P    +    KED T++  K+ +       S +S
Sbjct: 432 SKQLEESVRKHEMTDERRKALEYKPKPLEDKSPRFPKEDRTSLKSKRLEEEEKKRASKQS 491

Query: 420 KKKNHCILKEGKSLYPDERINHCILKKK 503
            KK + ++ +   L  + ++   I ++K
Sbjct: 492 SKKKYELIPDESDLIKERKLKKLIGEQK 519


>UniRef50_A7Q397 Cluster: Chromosome chr12 scaffold_47, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr12 scaffold_47, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 458

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 237 SSPYLEENKRNH*VCPEPVRAILHPPYPERRLNHCI 344
           SS  ++EN+  H V P   RA L+PP PE    +C+
Sbjct: 291 SSDEVDENELQHFVFPVDCRARLNPPLPENYFGNCL 326


>UniRef50_A5K321 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 589

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 416 IKEEKSLYPERRKITVS*RKNQPLYPEKKRKHHCILKE 529
           I+E K  YP R KI  S + N+    +KK+K +C+++E
Sbjct: 424 IQERKKNYPTREKIADSLKNNENGKKKKKKKPNCLIEE 461


>UniRef50_Q0DK66 Cluster: Os05g0188700 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os05g0188700 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 440

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 171 LVAALRDPKNPGPRIVSVYLKSSSPYLEENKRNH*VCPEPVRAILHPPYPERRL 332
           ++  L  P +P P + S+ L+  +   E ++ +H   P P  +++ PP P RR+
Sbjct: 1   MLTQLTSPHSPAPPLHSLRLRLVAIPPENSRHDHRPPPPPAASVVIPPRPRRRV 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,906,420
Number of Sequences: 1657284
Number of extensions: 14517405
Number of successful extensions: 34363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34324
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)