Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b24
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    28   1.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   4.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   6.4  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   6.4  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   8.4  

>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 237 SSPYLEENKRNH*VCPEPVRAILHPPYPERRLNHCILKEDSTTVS*KKTQPLYPHTISTE 416
           SS Y +   R H + P P R  L P  P RRL   ++   S  V  ++     P+T+++E
Sbjct: 155 SSAYYDSRSRLHGIQPPPKRRTLSP--PPRRLADPVVVGSSRYVE-EEVYRRPPYTLASE 211

Query: 417 SKKKNHCILKEGKSLYP 467
               +    + G S YP
Sbjct: 212 -VPSSASAYQAGYSSYP 227


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 235  AHRRILKKTKEITKSVQNQSAPYYIHRILKEDSTTVS*KKTQPPYPERRLN 387
            +H R +K  K+  KS+ ++  P+ +H  L   S  +     Q P  E+RLN
Sbjct: 1125 SHNRGIKVAKQKIKSIMSRIFPFSVHLPLDNSSELLK----QLPESEKRLN 1171


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 437 YPERRKITVS*RKNQPLYPEKKRKHHC 517
           YP  +K T+S   N+  YP++ + H C
Sbjct: 204 YPMNKKKTLSSETNKYEYPQQSKFHEC 230


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 74  PILLNQCA*LSSDLHNFVFHFLKST*RI 157
           P+ LN C  ++  + +F+  FL+ST ++
Sbjct: 490 PLNLNVCCCIAEPIQSFILSFLRSTYKV 517


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 449 FFQDTVIFLL*FSGYSMWIQWLSLLSGY 366
           F    ++FL+ F G+  W+   S+ S Y
Sbjct: 51  FIMAVMVFLVIFDGFPFWLSAFSIFSHY 78


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 454 FPSFRIQXXXXFDSVDIVCGYSG 386
           +P F ++     + VDI CGY G
Sbjct: 71  YPDFDVESNKKVEIVDIGCGYGG 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,573
Number of Sequences: 5004
Number of extensions: 62194
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)