Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b24
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81111-1|CAB03265.1|  349|Caenorhabditis elegans Hypothetical pr...    32   0.36 
L10990-7|AAB59174.1|  378|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    29   4.5  
U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81111-1|CAB03265.1|  349|Caenorhabditis elegans Hypothetical
           protein T01G5.1 protein.
          Length = 349

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 562 IIITFRKIKHQPGRFLLTRAEPQSPYHRNAETSSYNIRRLRNIVTHSKIAQE 717
           +II  ++I+H   R  L + +     H+N+ T S     LRN +TH K+ Q+
Sbjct: 20  LIIEEKEIEHYYSRIRLGKMKSMGA-HKNSPTLSIKCALLRNDITHQKMIQD 70


>L10990-7|AAB59174.1|  378|Caenorhabditis elegans Hypothetical
           protein C30A5.4 protein.
          Length = 378

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +3

Query: 339 CILKEDSTTVS*KKTQPLYPHTISTESKKKNHCILKEGKSLYPDERINHCILKKKENITV 518
           CI+KE S+  S  KTQP    TIS     K   + K+   +     I + + KK    + 
Sbjct: 24  CIIKEKSSVRSMAKTQPTSGRTISLSEINKPIALSKKNTEIKAAVEIQNRLTKKMAKNSE 83

Query: 519 S*KKNSSYPE 548
             KK +  PE
Sbjct: 84  RRKKMAHGPE 93


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 273 SDFFCFLQDTAMSFSSRRRRSEDPGF 196
           S FFC    T   F  R+RR E PG+
Sbjct: 363 SCFFCMSPGTLYKFGDRKRREERPGY 388


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 273 SDFFCFLQDTAMSFSSRRRRSEDPGF 196
           S FFC    T   F  R+RR E PG+
Sbjct: 291 SCFFCMSPGTLYKFGDRKRREERPGY 316


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 379 FFQDTVVESSFRIQWLSLLSGYGGCSMARTGSGQT**FLL 260
           F + TV++S   I W   +SG    S+A+TGSG+T  F+L
Sbjct: 149 FQKPTVIQS---ISWPIAMSGRDIISIAKTGSGKTLAFML 185


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 526 RKIHRIPKEEFIIIITFRKIKHQPGRFLLTRAEPQSPYHRNAETSSYNIRRLRNIVT 696
           +K+H++P +E  + I F+K++    +FL      Q     N + S  NI+++  IV+
Sbjct: 266 QKLHQMPTKEMAVFICFQKLEKDSEKFLKVIQVVQQLRSLNKD-SVQNIQQIPPIVS 321


>U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical
           protein K02F3.7 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 22  PERSTLIQSLDPSGQVFSYPPKSVR 96
           P+ ST  Q L PSG+   Y P S R
Sbjct: 201 PKTSTTFQLLAPSGETLPYKPASAR 225


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 171 LVAALRDPKNPGPRIV 218
           L+ ALRDPK PGP ++
Sbjct: 300 LLKALRDPKRPGPPVI 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,563
Number of Sequences: 27780
Number of extensions: 353353
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)