Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28b23
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 124 2e-29
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 102 6e-23
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 99 6e-22
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 53 5e-08
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 50 5e-07
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 37 0.003
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 34 0.019
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.95
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.3
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 28 1.7
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.2
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 2.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.7
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 6.7
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 6.7
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 26 6.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 124 bits (298), Expect = 2e-29
Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Frame = +3
Query: 309 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 488
RS +G L P SRDIKI +++++F+G L+++ +ELN G+RYGL+G NG GKS+ L +
Sbjct: 61 RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLES 120
Query: 489 LGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERV-KLEKLAEMLAHCEDDESQE 665
+ R+V PEHID + L E SD A+ +++ +++V KLE E L+ DD
Sbjct: 121 VAARDVEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEELS-TADDVDDV 179
Query: 666 QLMDVYDRLDDLSADTAEARAANILHGLGF 755
L Y+ LDD+ T EA+AA ILHGLGF
Sbjct: 180 LLESKYEELDDMDPSTFEAKAAMILHGLGF 209
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 396 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHI 524
L +D ++ R +VG NG GKS+LL + +PI ++
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNV 447
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 102 bits (244), Expect = 6e-23
Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 27/165 (16%)
Frame = +3
Query: 342 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEH 521
+S+DIKI + F G +L L L GRRYGL G NG GKS+LL AL RRE+ IP H
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTH 238
Query: 522 IDIFHLTREMPASDKTALQCVMEV---------DEERV-----KLEKLAEMLA------- 638
I I H+ +EM D ALQ V++ D+E++ +EK E L+
Sbjct: 239 ITILHVEQEMTGDDTPALQSVLDADVWRKYLIQDQEKITNRLSTIEKELEELSKDQTADQ 298
Query: 639 ------HCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLGF 755
E DE +L+D+ ++L ++ +D AE+RAA IL GLGF
Sbjct: 299 AISRRLERERDELDLRLLDIQNKLSEMDSDRAESRAATILAGLGF 343
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 387 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 491
G +L+ +++ R G+VG NG GKS++L L
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 99.1 bits (236), Expect = 6e-22
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 318 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 497
TG+L P SRD+++ S++ +G L++D+ L L GRRYGL+ NG GKS+LL A+
Sbjct: 264 TGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIAC 323
Query: 498 REVPIPEHIDIFHLTREMPASDKTALQCVMEVDE-ERVKLEKLAEMLAHCEDDESQEQLM 674
+P P +D + L RE ++ T ++ V++++E ER LE + E L + D++ +L
Sbjct: 324 GLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLEAMMEDLLD-DPDKNAVELD 382
Query: 675 DVYDRLDDLSADTAEARAANILHGLGF 755
+ RL DL + ++ R IL GL F
Sbjct: 383 TIQTRLTDLETENSDHRVYKILRGLQF 409
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 354 IKIANFSITFYGSELLQDTL-LELNCGRRYGLVGLNGCGKSSLLAALGRREVP 509
IK + S + G + L L+ R LVG NG GK++L+ + + P
Sbjct: 594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQP 646
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 52.8 bits (121), Expect = 5e-08
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 366 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREV---PIPEHIDIFH 536
+FS+ + G LL T L L G RYG+VG NGCGKS+LL A+G +V P P+ +
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCF 508
Query: 537 LTREMPASD 563
+ + D
Sbjct: 509 VAHSLQGED 517
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 354 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 509
+K+ N S T+ ++ L + + L+ R ++G NG GKS+L+ L +P
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIP 745
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 49.6 bits (113), Expect = 5e-07
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +3
Query: 351 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP-IPEHID 527
D+ FS+ + LL T L L GRRYGL G NG GKS+L+ A+ +V P H+
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLR 493
Query: 528 IFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDV 680
++ ++ S+ + + V ++ E++ +++ ++L+++
Sbjct: 494 TVYVEHDIDESEADTPSVDFILQDPAVPIKDRDEIVKALKENSFTDELINM 544
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 354 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 509
IK+ + S + G+ L D +++ R ++G NG GKS+L+ L +P
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLP 726
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 351 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHI 524
++ ++N S TF + L L+L G R LVG NG GKS+LL L + + HI
Sbjct: 2 EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI 61
Query: 525 DI 530
+
Sbjct: 62 SV 63
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 354 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 485
I + + + ++G ++L D + G R+ L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 399 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHIDI 530
L + +E++ + G+VG G GKS+L AL R P I+I
Sbjct: 1243 LNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEI 1286
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 339 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 512
P IK ++S+ + + +L D + + + G+VG G GKS+L AL R P
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPT 1278
Query: 513 PEHIDI 530
I +
Sbjct: 1279 SGDIQL 1284
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 351 DIKIANFSITFYGSELLQDTLLELNCGRRYG----LVGLNGCGKSSLL-AALGRRE 503
+IK FS + G + TL +++ R G +VG G GKSSLL A LG +
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLEACLGNMQ 634
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 396 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 497
+L + G + VG +GCGKS++L L R
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFR 491
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 591 VDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRL-DDLSADTAEA 722
+DE + E+ L DDE +E++ D+ D L D S +T+E+
Sbjct: 197 IDEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSES 241
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE-HIDIFHLT 542
L + L + + +VG++G GKS+L+ L R+ P + +ID + LT
Sbjct: 1118 LNNVSLSIEAREKVAIVGISGSGKSTLVELL-RKTYPSEDIYIDGYPLT 1165
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 429 GRRYGLVGLNGCGKSSLLAALGRREVP 509
G+ GLVG NG GKS+ L L + P
Sbjct: 103 GQVLGLVGTNGIGKSTALKILSGKMKP 129
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 467 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 363
S+P++ P+ PT+QLQ S L L P E KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 414 LELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEH 521
LEL GLVGL GKS+LL L + + E+
Sbjct: 231 LELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEY 266
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = +3
Query: 495 RREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQE 665
+ ++P +F+L +PAS T ++ + +K+ E +A +D +E
Sbjct: 298 QHKIPAINEDGLFYLITHLPASGGTGAAAQAAQQKKEQEEKKILETVARMDDSNKKE 354
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 549 MPA-SDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSA 707
+PA S+K A + L L+ +A + +EQL+D+ D+LD L +
Sbjct: 178 IPAPSEKAADAATHREQSLKQALPSLSNGIAKDSTEIDEEQLLDIRDKLDALKS 231
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 540 TREMPASDKTALQCVMEVDEERVKLEK-LAEMLAHCEDDESQEQLMDVYDRLDDLSADTA 716
TRE ASD L+ +M EE V + L +H + + +E++ + + L+A+ A
Sbjct: 1000 TRERNASDNLRLRALMRQLEEAVTQKNYLLSQQSHDDRESFRERMQILKSKYGALNAERA 1059
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 547 SRVRWNMSMCSGIGTSRRPKAASNDDFP 464
SR + +M G+GT ++P+ A +D FP
Sbjct: 200 SRSAVSGNMNPGVGTLQQPQRAGSDTFP 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,613
Number of Sequences: 5004
Number of extensions: 53496
Number of successful extensions: 284
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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