Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b20
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    31   0.80 
09_02_0063 - 3749675-3749734,3750264-3750309,3750851-3751422,375...    29   2.4  
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331...    29   3.2  
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96...    28   7.5  

>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = +2

Query: 200  LIKQINTQHFCANILKINNFYYSLAERKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQ 379
            L K  + Q     I  + N   SL E + L+     + + W   N        E K  LQ
Sbjct: 1321 LYKHYDGQSSSLVIKNLENLKGSLGEVQELAKYQ-QVRLVWSRSNFIEDSSMAEDKAVLQ 1379

Query: 380  VLRPSGEFETIKVAG 424
             LRP  + ETI++ G
Sbjct: 1380 KLRPHHDLETIEIEG 1394


>09_02_0063 -
           3749675-3749734,3750264-3750309,3750851-3751422,
           3751531-3751686
          Length = 277

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 160 VYNGFKPGYDEGEFDKANKH 219
           VYN FKPG+D G F    +H
Sbjct: 180 VYNKFKPGFDSGAFVPIGQH 199


>02_02_0661 -
           12731005-12731238,12732756-12732884,12732969-12733193,
           12733302-12733478,12733576-12733788
          Length = 325

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 437 TTVDNLNDIVYLATDNGVYK 496
           T+V+ +N++VY A +NGVYK
Sbjct: 174 TSVNEINELVYDAINNGVYK 193


>02_01_0135 +
           967172-967229,968316-968657,968936-969015,969063-969698,
           969819-971527,971563-972514,972821-973273,974303-974497
          Length = 1474

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 189 VITGLESVIDVRHTKNINKVHPSILFLNNL 100
           V TGL ++I++RH     KVH +I  L NL
Sbjct: 685 VPTGLNNLINLRHLIAHEKVHSTIAGLGNL 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,424
Number of Sequences: 37544
Number of extensions: 296422
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)