Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28b20
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-2|CAA87770.1| 415|Caenorhabditis elegans Hypothetical pr... 33 0.23
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 31 0.54
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 31 0.54
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 31 0.54
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 31 0.54
Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 6.7
U12964-14|AAU05575.1| 692|Caenorhabditis elegans Arginyl aa-trn... 28 6.7
U12964-13|AAA91224.2| 713|Caenorhabditis elegans Arginyl aa-trn... 28 6.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 6.7
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z47808-2|CAA87770.1| 415|Caenorhabditis elegans Hypothetical
protein D2013.2 protein.
Length = 415
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 443 VDNLNDIVYLATDNGVYKYKDDGSIQLYAALGEDVMYLAV 562
V +ND++ L+ D GV+ DD S++LY D + ++
Sbjct: 31 VARINDVILLSKDEGVWTASDDRSVRLYLKRDNDQFWPSI 70
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 278 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEF 403
R+N+ G+ +++++ W GN+FFT+ S + + SG F
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMF 503
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 278 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEF 403
R+N+ G+ +++++ W GN+FFT+ S + + SG F
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMF 503
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 278 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEF 403
R+N+ G+ +++++ W GN+FFT+ S + + SG F
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMF 503
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 278 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEF 403
R+N+ G+ +++++ W GN+FFT+ S + + SG F
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMF 503
>Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical
protein F25D1.1b protein.
Length = 367
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 386 RPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYKDD 508
+P E E ++ G G S + +N + ++ G Y+YKDD
Sbjct: 154 KPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGDYEYKDD 194
>Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical
protein F25D1.1a protein.
Length = 468
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 386 RPSGEFETIKVAGLGQSTTVDNLNDIVYLATDNGVYKYKDD 508
+P E E ++ G G S + +N + ++ G Y+YKDD
Sbjct: 255 KPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGDYEYKDD 295
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 296 IPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETI 412
+P I++ + TGN+F +SE ++ L R E I
Sbjct: 4266 VPTAIAVDYTTGNLFIAAVSENIENGLVTARKKRMSEPI 4304
>U12964-14|AAU05575.1| 692|Caenorhabditis elegans Arginyl aa-trna
synthetase protein1, isoform b protein.
Length = 692
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 410 IKVAGLGQSTTVDNLNDIVYLATDNGVYKYKDDGSIQLYAALGEDVMYLAVSNDGGTMY 586
IK+ +G+S D + ++V N +++ Q+ G D+ V +DGG Y
Sbjct: 380 IKIKDVGESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCDIPLTVVKSDGGFTY 438
>U12964-13|AAA91224.2| 713|Caenorhabditis elegans Arginyl aa-trna
synthetase protein1, isoform a protein.
Length = 713
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 410 IKVAGLGQSTTVDNLNDIVYLATDNGVYKYKDDGSIQLYAALGEDVMYLAVSNDGGTMY 586
IK+ +G+S D + ++V N +++ Q+ G D+ V +DGG Y
Sbjct: 380 IKIKDVGESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCDIPLTVVKSDGGFTY 438
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 296 IPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETI 412
+P I++ + TGN+F +SE ++ L R E I
Sbjct: 4266 VPTAIAVDYTTGNLFIAAVSENIENGLVTARKKRMSEPI 4304
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 27.5 bits (58), Expect = 8.8
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = -3
Query: 653 RKFPVFVRHLTV-YERDSV--ATSLCT*FRRHSKQPSTLRPLLKPRKAVSSRR---LCIY 492
R+F + +R + ER +V A F + S+Q +P +PRKAVSSRR +
Sbjct: 713 RQFAILIREESYGLERQAVPVADGAAQYFEQLSEQ-MLYQP--RPRKAVSSRRHHYTQPH 769
Query: 491 TRHYQWPNKQCHLN 450
H Q P+ Q HL+
Sbjct: 770 PHHQQMPHHQPHLH 783
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,054,909
Number of Sequences: 27780
Number of extensions: 282731
Number of successful extensions: 811
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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