Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b19
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   0.65 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   1.5  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    25   3.5  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    24   4.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    24   6.1  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    23   8.1  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    23   8.1  

>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 116 VAKTGLLICRFVFVIASFHDAVWSMGIWRRP 208
           +A +G L+CRFV+    F   V+ +G W +P
Sbjct: 424 IAYSGPLMCRFVY--NKFQPGVFYVGKWSKP 452


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 39  CVTSRILLVKRVQF*KTNDIILEVDPSPRRVCSYVVLYLSL 161
           C  S I L K  +    N   + V   PRR+CS  + Y  L
Sbjct: 677 CTNSYISLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVL 717


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 300 KYSHFI*HNFQYTKKAI 250
           KY H I H  QYTK AI
Sbjct: 34  KYEHLITHWAQYTKAAI 50


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 311 FFLKNIVILFNTISNIPKKQLTITSMT 231
           FFLKNI++L N +  + K  +  T+++
Sbjct: 30  FFLKNIIVLSNYLYLLYKAWIVCTTIS 56


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 128 GLLICRFVFVIASFHDAVWSMGIW 199
           G  I RF  + A +   VWS+G W
Sbjct: 292 GRQITRFGTLTARWKTGVWSLGSW 315


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 150 YLSLPLFTTLSGAWVYGVD 206
           ++ L L T LSGA+V G+D
Sbjct: 312 FVGLVLITLLSGAFVAGLD 330


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 126 RVCSYVVLYLSLP 164
           R+C+Y++LYL  P
Sbjct: 425 RICTYIMLYLKPP 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,937
Number of Sequences: 5004
Number of extensions: 21561
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)