Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b19
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0144 + 5815403-5815520,5815551-5816314                           28   1.8  
02_02_0481 - 10815853-10816229,10816877-10816942,10817009-108173...    27   4.1  
06_01_0871 - 6659682-6659937,6660650-6660711,6660824-6661018,666...    25   9.5  

>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 184 PDSVVKRGNDKYKTTYEQTRLGDGSTSKMMSFV 86
           PD VVK G+++Y+   E+T+   G   +  S V
Sbjct: 236 PDPVVKEGDEQYRRLVEETKSAAGRERRRESAV 268


>02_02_0481 -
           10815853-10816229,10816877-10816942,10817009-10817311,
           10817432-10817531,10818523-10818531
          Length = 284

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 21  MIHT*SCVTSRILLVKRVQF*KTNDIILEVDPSPRRVCSYVVLYLSLPLFTTLSGAWVYG 200
           M+H+ S V+     V  V +  T DI   VDP+  RV + V+   +   F + +G+    
Sbjct: 218 MVHSRSTVSKYFHRVLNVVYAITIDINKHVDPNFARVDNRVMQDEAFQPFASAAGS---- 273

Query: 201 VDPFHTSFC 227
           VD  H+ +C
Sbjct: 274 VDGTHSCYC 282


>06_01_0871 -
           6659682-6659937,6660650-6660711,6660824-6661018,
           6663112-6663336,6663495-6663653
          Length = 298

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 147 LYLSLPLFTTLSGAWVY 197
           +Y   P+  TLSGAWVY
Sbjct: 241 IYFLGPVVGTLSGAWVY 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,230,972
Number of Sequences: 37544
Number of extensions: 121945
Number of successful extensions: 225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)