Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b19
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   2.8  
U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 131 LLICRFVF-VIASFHDAVWSMGIWRR 205
           LLICRFVF  +A F  + W   +W++
Sbjct: 698 LLICRFVFQALAFFWLSFWLDPVWKK 723


>U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical
           protein ZK328.6 protein.
          Length = 394

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 18  LMIHT*SCVTSRILLVKRVQF*KTNDIILEVDPSPR 125
           LMIH    VT R L ++   F +   + L+V  +PR
Sbjct: 135 LMIHPDDDVTQRFLAIEGTLFSELQQLTLQVHVNPR 170


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 242 TSMTNTKRRMKRVYAIYPCS 183
           TSM N K  M+ VY I+P S
Sbjct: 301 TSMANVKTAMEGVYDIHPAS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,698,479
Number of Sequences: 27780
Number of extensions: 118923
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)