Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b19
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   1.5  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   2.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 297 YSHFI*HNFQYTKKAINDHVNDKYKTTYE 211
           +SH I +      + I+D+++D++K TY+
Sbjct: 258 HSHTIIYLSAKGHRPIDDNIDDEFKGTYK 286


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 219 TYEKGLRHIPMLQTAS*KEAMTNTKRHMS 133
           +Y  G  HIP++  +S   A ++   H+S
Sbjct: 115 SYTSGFYHIPVIGISSRDSAFSDKNIHVS 143


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -2

Query: 213 EKGLRHIPMLQTAS*KEAMTNTKRHMSRPVLATGLPLR*CHLFFKIELALQVEF 52
           +K LRH+P     S K+     K   +         L  C++ F  E+   V F
Sbjct: 78  QKALRHLPRSMQDSTKKLFNKCKSIQNEDPCEKAYQLVKCYVEFHPEVLQTVPF 131


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 246 DHVNDKYKTTYEKGLRHIPMLQTAS*KEAMTNTKRHMSRPVLA 118
           + V  +YK   E   RHIP    AS  ++     R++S  V++
Sbjct: 410 ESVTSQYKNIREDDARHIP---HASVTDSENTVPRYLSPDVIS 449


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 196 YTHAPDSVVKRGNDKYKTTYEQTRLGDGSTSK 101
           +TH    V++R   K K+   + R    +TSK
Sbjct: 72  HTHEKKLVLERSKTKSKSPESRDRSNTSNTSK 103


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 163  GNDKYKTTYEQTRLGDGSTSK 101
            G+DK    Y+QT +G  +  K
Sbjct: 1614 GSDKDDVVYQQTGVGGATLDK 1634


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 251 LTITSMTNTKRRMKRVYAIYPC 186
           LT+  +   K+R+ ++ +I PC
Sbjct: 215 LTMVKLNWPKKRVTKMSSINPC 236


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 153 LSLPLFTTLSGAWVYGVDPFH 215
           L L  F  ++ +W +GV+ F+
Sbjct: 456 LFLMFFECIAISWAFGVNRFY 476


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 153 LSLPLFTTLSGAWVYGVDPFH 215
           L L  F  ++ +W +GV+ F+
Sbjct: 509 LFLMFFECIAISWAFGVNRFY 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,132
Number of Sequences: 438
Number of extensions: 1416
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)