Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b07
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   253   2e-68
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    59   5e-10
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    29   0.67 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.2  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   2.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.1  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   3.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   4.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   8.3  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   8.3  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   8.3  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   8.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  253 bits (620), Expect = 2e-68
 Identities = 117/202 (57%), Positives = 154/202 (76%)
 Frame = +2

Query: 113 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 292
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 293 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 472
           ++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 473 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 652
           + P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187

Query: 653 KQVYDSGTIFAPEILDIKPEDL 718
             +YD G +F+PEILD+  EDL
Sbjct: 188 LTIYDQGNVFSPEILDVSEEDL 209


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
 Frame = +2

Query: 50  KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 229
           K  RS   TL++  ++     K+  F  + Q LD +   +I    N+ +  +++IR   +
Sbjct: 3   KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61

Query: 230 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 394
           GS I  MGK  +M KA+     ++H +N   L KLL    G VG +FT     EV     
Sbjct: 62  GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116

Query: 395 ENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISK 532
           E+ VQ   AR GA+AP + VIPA       G  P +             + L +PT +  
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKN 176

Query: 533 GTIEIINDVHILKPGDKVGASEATLLNMLNI--SPFSYGLV 649
           G + ++ D  +   G ++ + +  LL +  I  + F  GL+
Sbjct: 177 GVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLL 217


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 243 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 350
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 549 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 424
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 309 RAGLLSRWSLMALRIIVFFPMSTILEPR 226
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 387 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 262
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 556 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 434
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +3

Query: 180 PITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSP 359
           P+T      S SV     PV+ S   T+  + P  +T  T   + NC  TS + L + +P
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-TSTSVLYTSTP 544

Query: 360 AETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPPTTP 470
             ++  + TNC  T + +     P+     +   +TP
Sbjct: 545 VTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTP 580


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 483 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 313
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 312 SRAGL 298
           S   L
Sbjct: 195 SEEEL 199


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 402  LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 241
            LFSN + R +    R+ T     L+ GN++     +  W+L+A   I  F  +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 436 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 570
           P+    ++P H+PW  E+    G F       G   +H+   H E
Sbjct: 183 PVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 227



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 436 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 570
           PI    ++P H+PW  E+    G F       G   +H+   H E
Sbjct: 295 PIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEE 339


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 161 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 307
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 11  FVPHGSRAFCLVLKFHRSPYA 73
           F+PHG+R +  +LK+ R  Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 556 IVDDFNSTL*NLGRDRKSL 500
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,243
Number of Sequences: 5004
Number of extensions: 73010
Number of successful extensions: 214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)