Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b07
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   320   6e-88
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    65   4e-11
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82266-17|CAJ80813.1|  446|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z68213-11|CAJ80817.1|  446|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical p...    29   3.4  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  320 bits (786), Expect = 6e-88
 Identities = 142/212 (66%), Positives = 180/212 (84%)
 Frame = +2

Query: 86  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 265
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 266 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 445
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 446 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 625
           V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML +
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180

Query: 626 SPFSYGLVVKQVYDSGTIFAPEILDIKPEDLR 721
           +PFSYGLVV+QVYD GT++ PE+LD+  E+LR
Sbjct: 181 TPFSYGLVVRQVYDDGTLYTPEVLDMTTEELR 212


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
 Frame = +2

Query: 59  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 238
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 239 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 412
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 413 PARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 589
            AR G +A  +VV+P    +          + L +PTK+ KG I +     + K G+ + 
Sbjct: 125 YARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLT 184

Query: 590 ASEATLLNMLNISPFSYGLVVK 655
             +A +L    +    + L+ K
Sbjct: 185 VEQAKILKHFEVKMSQFRLIFK 206


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +3

Query: 243 CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SWRSVTNCWRTKSKLQ 416
           CSW        P S+T +   QP+ N     R     C+P      +S    W T S+  
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332

Query: 417 LVPVPLPHCQSSFP 458
            +P P P+  +  P
Sbjct: 333 TLPTPAPYVSTQAP 346


>Z82266-17|CAJ80813.1|  446|Caenorhabditis elegans Hypothetical
           protein C01F6.6d protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
           + P RN CH S       SP  +SW + T+  ++K     VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156


>Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
           + P RN CH S       SP  +SW + T+  ++K     VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156


>Z68213-11|CAJ80817.1|  446|Caenorhabditis elegans Hypothetical
           protein C01F6.6d protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
           + P RN CH S       SP  +SW + T+  ++K     VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156


>Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 300 IQPSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLP 437
           + P RN CH S       SP  +SW + T+  ++K     VP P P
Sbjct: 116 VSPMRNSCHPSNN-----SPPPSSWYAPTSYSQSKETPVFVPPPPP 156


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 41  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 154
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 450 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 340
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 389 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 538
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,128
Number of Sequences: 27780
Number of extensions: 426658
Number of successful extensions: 1311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)