Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28b01
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 30 0.38
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 2.7
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 3.5
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 27 3.5
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 4.7
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 8.1
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 8.1
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 25 8.1
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Frame = +3
Query: 303 KDTNALVPLVWRESKEIKLPYKTLSHNLS-KIIKV--YVYQHDKI 428
++ N +W+ E K+PY +LS++LS +I+K+ +Y ++K+
Sbjct: 986 RNANLEFEAIWKGHSENKIPYTSLSNHLSTEIVKLDHDIYNYEKL 1030
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 69 GNFMIEKEISYSINFSQDLLYKILNSYIVPNYSLAQQYFD 188
G+F+ + +++ I S+D+ + N I P S+ ++Y D
Sbjct: 763 GHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYID 802
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 384 LSKIIKVYVYQHDKIEIKFEHV---YFSKSDIDLFDSTMANKISKLLTLLENGNASSETL 554
L K +K + + I +K E + YF ++L + N NG ASS+ L
Sbjct: 1433 LQKNLKNPILLNLPISVKIEEISINYFKSVHLNLLTAVFCNMAKLYADAKTNGFASSQYL 1492
Query: 555 QNSQVG-SDEILARIRLEYEFDDDAPDDAQLNVM 653
Q+ + +L+ ++ YE + + D L V+
Sbjct: 1493 QSLFIHYLSSLLSSMQHSYETNGHSSDTHSLFVI 1526
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 565 CEFCSVSDEAFPFSNKVSSLDILFAIVESNKSMSLFEKYT 446
CE C + A PF + S + F + + K MSL + T
Sbjct: 297 CEICRLRGTALPFRDIYSGRESSFYDLHNRKIMSLLRQTT 336
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = -2
Query: 538 AFPFSNKVSSLDILFAIVESNKSMSLFEKYTCSNLISILSCW*TYTLIILLKLCERVXXX 359
A F+N LD+L + ++++ FE SNL+ +L Y ++L KL E+
Sbjct: 503 AIRFNNNERVLDVLVESEQYSEALRFFESLPPSNLLPLLL---KYGRVLLDKLPEKTTNI 559
Query: 358 XXXXXXXLHTNGTNALVSLGQ 296
H + S G+
Sbjct: 560 FIQFYSNSHRGDLSTSESKGE 580
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +3
Query: 477 FDSTMANKISKLLTLLENGNASSETLQN 560
FD+++ N++ +L+ + +NG+ SS ++ N
Sbjct: 88 FDNSLKNELLELIDMPQNGDDSSTSITN 115
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 456 SKSDIDLFDSTMANKISKLLTLLENGNASSETLQNSQVGSDEILARIRLEYEFDDDAPDD 635
++ D D++ + + +L + LE SS ++N+Q E+ A + ++D+D D
Sbjct: 257 AEKDADIYSEFIQQYMEQLESSLEK---SSTAIENAQNRLAEMTAHLAESSDYDNDDDTD 313
Query: 636 AQLN 647
+N
Sbjct: 314 GIIN 317
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 417 HDKIEIKFEHV-YFSKSDIDLFDSTMANKISKLLTLLENGNASSETLQNSQVGSDEILAR 593
H EI F+ + YF K + A K+ K+ + E N + QNS + +E+ +R
Sbjct: 694 HKIAEITFQKLRYFEKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNS-LYLNEVESR 752
Query: 594 IRL 602
I +
Sbjct: 753 INI 755
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.1
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 141 NSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWP---KDT 311
++Y+ NYS + D Y +G I I N+I V+ + +KK + P D
Sbjct: 503 SNYLWFNYSHRSKEIDYYHMSGILMGIAIH---NSINLDVQMPRAFYKKLLQLPLSFNDL 559
Query: 312 NALVPLVWRESKEIKL 359
+ P ++R KE+ L
Sbjct: 560 DDFQPSLYRGLKELLL 575
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 8.1
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Frame = +3
Query: 219 IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESKEI-KLPYKTLSHNLSKI 395
IP+ S +NI++S++K S HK + + ++ I + TL+ N KI
Sbjct: 723 IPMDSIVSNILASLEK--SVHKNYESLRSQLLEYKAANEKHTEAILSVVSSTLTENTGKI 780
Query: 396 IKVYVYQHDKIEIKFEHVYFS-----KSDIDLFDSTMANKISKL 512
++ V + ++ +K E + S K++++ +S + N I++L
Sbjct: 781 LESVVEKSMQVALK-EEIANSVRNALKNNLEKIESFLENSIAEL 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,790
Number of Sequences: 5004
Number of extensions: 59291
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -