Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b01
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    33   0.30 
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439...    29   2.8  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 45  VAVINMDHGNFMIEKEISYSINFSQDLLYKILNSYI---VPNYSLAQQYFDLYDENGFRT 215
           + V+N  H  F+ E  ++Y +++ +  +Y  ++  I      +SL Q Y DL+D+     
Sbjct: 216 IEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFDQIDETM 275

Query: 216 RIPIQSACNNIISSVK 263
           +  IQ  C      ++
Sbjct: 276 KEAIQRDCTRYAPGIE 291


>01_06_1723 -
           39443176-39443505,39443615-39443710,39443834-39443902,
           39444381-39444443,39444521-39444598,39444725-39444838,
           39445727-39445804,39446457-39446522,39446739-39446804,
           39446896-39447003,39447355-39447432,39447951-39448010,
           39448087-39448191,39448407-39448595,39448922-39448985,
           39449244-39449385,39449494-39449654,39449952-39450076,
           39450230-39450300,39450410-39450560,39450713-39450769,
           39451049-39451143,39451331-39451379
          Length = 804

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 477 FDSTMANKISKLLTLLENGNASSETLQNSQVGSDEILARIRLEYEFDDDAPDD 635
           F+  +A K S  +T   N  ++S+  +N   G ++I++ IR +YE     P+D
Sbjct: 313 FEEELAEKFSGGVTTTRNKESASDD-ENEDTGRNKIVSDIRKKYEKKLAVPND 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,548,287
Number of Sequences: 37544
Number of extensions: 329554
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)