Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b01
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   4.4  
Z36752-7|CAA85329.1|  468|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    28   5.8  
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    28   7.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    28   7.6  

>AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical
           protein T07H3.3a protein.
          Length = 362

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 2/161 (1%)
 Frame = +3

Query: 189 LYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESKEIKLPYK 368
           L  ENG R  + ++ AC ++ISS +  N + K  + W    + L     R   ++ +   
Sbjct: 201 LVSENGNRFAVKLKDACFDLISS-ETYNCQGKFILEWRSIGDFLNNGKMRVEAKVNVLEN 259

Query: 369 TLSHNL--SKIIKVYVYQHDKIEIKFEHVYFSKSDIDLFDSTMANKISKLLTLLENGNAS 542
              +N+  ++ +K    + ++   + ++  F K ++D    T    + ++   ++  NA 
Sbjct: 260 VGVNNVKFAEDVKTQPIRVERSRAREDYFDFIKKEVDQEMET----VKEMARKVKLSNAK 315

Query: 543 SETLQNSQVGSDEILARIRLEYEFDDDAPDDAQLNVMCNII 665
            E    S   +DE      LE   D     DA ++V+  ++
Sbjct: 316 LEESLKSHSNADEADLMKFLEIRHDKAVLTDATVDVVLQVV 356


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +3

Query: 231 SACNNIISSVKKTNSKHKKFVYWPKDTNALV-PLVWRE--SKEIKLPYKTLSHNLSKIIK 401
           S  +NII++V++        V    +TN L+ P    +  +K I+L  +    N S   K
Sbjct: 739 SPYDNIIANVQRAFPSRNMIVKL-SETNVLIAPENMHKVFAKFIRLTEQNQQRNGSVTFK 797

Query: 402 VYVYQHDKIEIKFEHVYFSKS 464
           +Y  + D+I IK  H++ S +
Sbjct: 798 LYYEEDDRIPIKVPHIFNSSA 818


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 96  SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 266
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 267 TN 272
            N
Sbjct: 312 QN 313


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 96  SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 266
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 267 TN 272
            N
Sbjct: 312 QN 313


>Z36752-7|CAA85329.1|  468|Caenorhabditis elegans Hypothetical
           protein F35H8.7 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 255 SVKKTNSKHKKFVYWPKDTNALVPLVWRESKEIKLPYKTLSHNLSKIIKVYVYQHDKIEI 434
           + KK  S +KK           +P ++R ++E K   + ++   SKII   +Y+  K + 
Sbjct: 41  TTKKNQSNNKKRPPPINKARKSLPSIFRRAEENKDSAQIITPTGSKIIGSPLYKRSKSDS 100

Query: 435 KFEHVY-FSKS 464
            F+H + F K+
Sbjct: 101 FFDHAFNFDKN 111


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 231 SACNNIISSVKKTNSKHKKFVYWPK 305
           SAC+N    ++  N+  + F YWP+
Sbjct: 29  SACSNFFQFIRLNNNVMESFEYWPR 53


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 565 CEFCSVSDEAFPFSNKVSSLDILFAIVESNKSMSLFEKYTCSNLISILSC 416
           C+F S++DE  PF     + + + A    N ++SL    +      +L+C
Sbjct: 54  CDFDSINDENDPFDKSSMNEESILASSNQNSALSLLSAPSSIARNKVLAC 103


>Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical
           protein F09B9.5 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 252 SSVKKTNSKHKKFVY----WPKDTNALVPLVWRESKEI 353
           S V+    +H+K+ Y    W   TN    ++WR +KEI
Sbjct: 76  SVVEHWYQEHEKYEYETPGWQTGTNYFTQVIWRSTKEI 113


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 219  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 323
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 219  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 323
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,849,342
Number of Sequences: 27780
Number of extensions: 325674
Number of successful extensions: 966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)