Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28b01
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.8  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.8  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
 Frame = +3

Query: 297 WPKDTNALVPLVWRESKEIKLPYKTLSHNLSKIIKVYVYQHDKIEIKFEHVYFSKSDIDL 476
           W K  N+        S  +  P +    +L      Y+   + +E++      S   ID 
Sbjct: 289 WNKPINSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDE 348

Query: 477 FDSTMANKISKLLTLLENG-NASSETLQNSQVGSDEILARIRLEYEFD 617
           +   +     + L +L N    SS+++     G  +ILAR  L Y FD
Sbjct: 349 YGKKIDIYTPEGLNMLGNVIEGSSDSINTKFYGMYDILARDILGYNFD 396


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 316 RWCRWCGERAKKSNCLTR 369
           RWC W     +K   LTR
Sbjct: 387 RWCTWSEGDLEKCKALTR 404


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 316 RWCRWCGERAKKSNCLTR 369
           RWC W     +K   LTR
Sbjct: 387 RWCTWSEGDLEKCKALTR 404


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 316 RWCRWCGERAKKSNCLTR 369
           RWC W     +K   LTR
Sbjct: 387 RWCTWSEGDLEKCKALTR 404


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 161 LFAGTTIFRFVRRKRLSHSYTYSER 235
           LFAGT    F    ++ + YTY  R
Sbjct: 9   LFAGTVAADFQHNWQVGNEYTYLVR 33


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
 Frame = +3

Query: 297 WPKDTNALVPLVWRESKEIKLPYKTLSHNLSKIIKVYVYQHDKIEIKFEHVYFSKSDIDL 476
           W K  N+        S  +  P +    +L      Y+   + +E++      S   ID 
Sbjct: 289 WNKPINSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDE 348

Query: 477 FDSTMANKISKLLTLLENG-NASSETLQNSQVGSDEILARIRLEYEFD 617
           +   +     + L +L N    +S+++     G  +ILAR  L Y FD
Sbjct: 349 YGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMYDILARDILGYNFD 396


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 549 TLQNSQVGSDEILARIRLEYEFDDDAPDD 635
           TL+  Q+G   ++   R+E   D    DD
Sbjct: 18  TLEEFQIGLRAVVPICRIETSIDQQKEDD 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,108
Number of Sequences: 438
Number of extensions: 4275
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)