Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a21
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711           44   5e-05
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    27   6.0  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    27   6.0  

>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
          Length = 81

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 217 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQY 369
           M +  +W+EF   +  L+   P  TRY VKY H +G   +K+TDN + + +
Sbjct: 1   MVYFDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHENIHW 51


>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 316 NVNI*HCTEYLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLK 176
           +VN  +   +  DP+    PR  +T P   Q+ +RP   Y+ ++FL+
Sbjct: 147 SVNANYLLNFHYDPISRPQPRGPRTYPTRRQRKIRP---YNKDLFLQ 190


>02_03_0199 + 16263549-16263644,16264941-16265899,16267140-16267791,
            16267895-16267981,16268253-16268381,16269990-16270036,
            16271337-16271438,16272720-16272843,16272981-16273028,
            16273934-16274026,16274325-16274408,16274536-16274619,
            16274751-16274819,16275531-16275590,16275946-16276017,
            16276957-16277064,16278162-16278238,16278391-16278474,
            16278617-16278728,16278778-16278810,16278811-16278900,
            16279012-16279077,16279163-16279258,16279446-16279497,
            16279723-16279775,16279998-16280018
          Length = 1165

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 280  DPVDITF-PRLSQTLPNLEQKSLRPIIDYSLEMFLKIVP 167
            D +  TF PRL   LP+ ++K++  I+   L++FLK  P
Sbjct: 1009 DEIQSTFTPRLLGVLPDSDEKNVYDILLLVLQVFLKQGP 1047


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,131,318
Number of Sequences: 37544
Number of extensions: 184131
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)