Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a21
         (483 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20998-1|AAA70170.1|   86|Homo sapiens signal recognition partic...    83   4e-16
BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition part...    83   4e-16
BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition part...    83   4e-16
BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition part...    83   4e-16
BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition part...    83   4e-16
EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition part...    54   3e-07
BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.         54   3e-07
BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.         54   3e-07
BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.         52   1e-06
BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.         52   1e-06
BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal recog...    42   0.002
X57398-1|CAA40655.1| 1190|Homo sapiens pm5 protein protein.            29   8.6  
U91318-4|AAC15783.1| 1148|Homo sapiens pM5 (3' partial) protein.       29   8.6  
BC065535-1|AAH65535.1| 1222|Homo sapiens NODAL modulator 1 protein.    29   8.6  
BC041131-1|AAH41131.1| 1222|Homo sapiens NODAL modulator 2 protein.    29   8.6  
BC028389-1|AAH28389.1| 1100|Homo sapiens NOMO2 protein protein.        29   8.6  

>U20998-1|AAA70170.1|   86|Homo sapiens signal recognition particle
           subunit 9 protein.
          Length = 86

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 414
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 415 SNLLRHMAS 441
           S L+R M +
Sbjct: 67  SQLMRLMVA 75


>BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 414
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 415 SNLLRHMAS 441
           S L+R M +
Sbjct: 67  SQLMRLMVA 75


>BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 414
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 415 SNLLRHMAS 441
           S L+R M +
Sbjct: 67  SQLMRLMVA 75


>BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 414
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 415 SNLLRHMAS 441
           S L+R M +
Sbjct: 67  SQLMRLMVA 75


>BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 83.4 bits (197), Expect = 4e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 414
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 415 SNLLRHMAS 441
           S L+R M +
Sbjct: 67  SQLMRLMVA 75


>EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition
           particle 9 kDa isoform protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 384
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 384
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 384
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.
          Length = 52

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 351
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.
          Length = 49

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +1

Query: 235 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 351
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal
           recognition particle 9kD protein.
          Length = 45

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 340 ITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMAS 441
           +TD+  CL YKT+  QDV+KI+KF S L+R M +
Sbjct: 1   VTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVA 34


>X57398-1|CAA40655.1| 1190|Homo sapiens pm5 protein protein.
          Length = 1190

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 272 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 376
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 333 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 367


>U91318-4|AAC15783.1| 1148|Homo sapiens pM5 (3' partial) protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 272 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 376
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399


>BC065535-1|AAH65535.1| 1222|Homo sapiens NODAL modulator 1 protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 272 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 376
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399


>BC041131-1|AAH41131.1| 1222|Homo sapiens NODAL modulator 2 protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 272 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 376
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 365 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 399


>BC028389-1|AAH28389.1| 1100|Homo sapiens NOMO2 protein protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 272 YRIQ*ILGTVLNIHIQKVHLMSKLLTIKSAFNTKQ 376
           +R++ I      IH QK HL  + +TIK A NT Q
Sbjct: 198 FRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQ 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,496,049
Number of Sequences: 237096
Number of extensions: 1145057
Number of successful extensions: 1717
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)