Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a21
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-3|CAA80148.1|   76|Caenorhabditis elegans Hypothetical pr...    78   4e-15
Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006629-10|ABC48257.1|  312|Caenorhabditis elegans Hypothetical...    29   2.3  
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC087081-6|AAG37976.1|  301|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical...    27   5.4  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    27   7.1  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    27   7.1  
Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z22177-3|CAA80148.1|   76|Caenorhabditis elegans Hypothetical
           protein ZK512.4 protein.
          Length = 76

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 34/71 (47%), Positives = 48/71 (67%)
 Frame = +1

Query: 217 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVR 396
           MT+  +W+EF KAAE L+  +P   R+  KY+H+KG   +K+TD+  CLQY T   QDV+
Sbjct: 1   MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60

Query: 397 KIDKFMSNLLR 429
           K++K  S LLR
Sbjct: 61  KLEKLSSTLLR 71


>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 226 VPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN 333
           +P +E FE+    + + D +N      Y H K  FN
Sbjct: 151 IPKYENFERLGTEIPIADLVNLTMGELYEHLKAVFN 186


>AC006629-10|ABC48257.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.8 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = -3

Query: 274 VDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLKI 173
           ++IT+  + +T+ NLE  S+R +I++ + +F ++
Sbjct: 86  IEITYENVKRTIRNLEGYSVRSVIEHFMAIFDRV 119


>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
           protein C02E11.1b protein.
          Length = 1123

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 187 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQ 366
           F ++   L V T   +   F  A   LY    I+   ++K   S+G+ NV  T N KC  
Sbjct: 191 FKISGYQLEVHTRTESMNPFVDAVMTLYATSSIDLP-NIKCVGSEGSLNVPSTHNVKCSI 249

Query: 367 YKTE 378
            KT+
Sbjct: 250 GKTD 253


>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
           protein C02E11.1a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 187 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQ 366
           F ++   L V T   +   F  A   LY    I+   ++K   S+G+ NV  T N KC  
Sbjct: 189 FKISGYQLEVHTRTESMNPFVDAVMTLYATSSIDLP-NIKCVGSEGSLNVPSTHNVKCSI 247

Query: 367 YKTE 378
            KT+
Sbjct: 248 GKTD 251


>AC087081-6|AAG37976.1|  301|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.11 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 247 EKAAEMLYLQDPIN-TRYSVKYSHSKGAFNVK 339
           E+A ++L + DP + +RY ++YS+ +G F +K
Sbjct: 252 EEADDILKIFDPDSPSRYEIEYSNDQGKFAIK 283


>AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical
           protein K09C6.1 protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 307 YSHSKGAFNVKITDNKKCLQYKTEVQ-QDVRKIDKF 411
           +S ++  FN+KITD  +C+  K E++  D  + D F
Sbjct: 179 FSVNQHPFNIKITDYSRCMTRKPEMKVPDDARPDSF 214


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 39  INKKSTYIST*LKFPDYNLSVYPICN*CVRRAYIAYCSVPTYS 167
           IN +   IST   F  Y +      N C R  ++  C+V  YS
Sbjct: 400 INFQVEEISTQPNFDHYTIKPAKSANACARFCFVGLCTVAVYS 442


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 39  INKKSTYIST*LKFPDYNLSVYPICN*CVRRAYIAYCSVPTYS 167
           IN +   IST   F  Y +      N C R  ++  C+V  YS
Sbjct: 400 INFQVEEISTQPNFDHYTIKPAKSANACARFCFVGLCTVAVYS 442


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 39  INKKSTYIST*LKFPDYNLSVYPICN*CVRRAYIAYCSVPTYS 167
           IN +   IST   F  Y +      N C R  ++  C+V  YS
Sbjct: 400 INFQVEEISTQPNFDHYTIKPAKSANACARFCFVGLCTVAVYS 442


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 39  INKKSTYIST*LKFPDYNLSVYPICN*CVRRAYIAYCSVPTYS 167
           IN +   IST   F  Y +      N C R  ++  C+V  YS
Sbjct: 400 INFQVEEISTQPNFDHYTIKPAKSANACARFCFVGLCTVAVYS 442


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 39  INKKSTYIST*LKFPDYNLSVYPICN*CVRRAYIAYCSVPTYS 167
           IN +   IST   F  Y +      N C R  ++  C+V  YS
Sbjct: 400 INFQVEEISTQPNFDHYTIKPAKSANACARFCFVGLCTVAVYS 442


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 39  INKKSTYIST*LKFPDYNLSVYPICN*CVRRAYIAYCSVPTYS 167
           IN +   IST   F  Y +      N C R  ++  C+V  YS
Sbjct: 400 INFQVEEISTQPNFDHYTIKPAKSANACARFCFVGLCTVAVYS 442


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 211 AVMTFVPNWE-EFEKAAEMLYLQDPINTRYSVKY 309
           +V+T+ P+   + E  A  L ++DP+N  +S+KY
Sbjct: 145 SVVTYSPSSNTDDETEAVTLEVKDPVNVNFSIKY 178


>Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical
           protein M01F1.4b protein.
          Length = 807

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 78  ILIMYLCMYSFYLFIQ*PAQMN 13
           ++I+Y C Y+ ++++Q P ++N
Sbjct: 166 LIIVYFCCYAAWIYVQNPKEIN 187


>Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical
           protein M01F1.4a protein.
          Length = 808

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 78  ILIMYLCMYSFYLFIQ*PAQMN 13
           ++I+Y C Y+ ++++Q P ++N
Sbjct: 167 LIIVYFCCYAAWIYVQNPKEIN 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,895,258
Number of Sequences: 27780
Number of extensions: 202612
Number of successful extensions: 571
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)