Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a19
         (765 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DW82 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_A3J388 Cluster: O-antigen transporter; n=1; Flavobacter...    33   5.9  
UniRef50_A2BPK8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_A2DW82 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1300

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 403 MQYNYDFHFHFRYVVAFTFWHPWILQIIFNIKWVTLLMSCCRKSAICGVQPSI 245
           M+  Y+  F  RY     FW  W+ +II  +++V L +  C+ S + G Q S+
Sbjct: 6   MRQFYEMGFETRYRAQLPFWLKWLREIIRFMQYVVLSIYFCKLSNMVGRQSSL 58


>UniRef50_A3J388 Cluster: O-antigen transporter; n=1; Flavobacteria
           bacterium BAL38|Rep: O-antigen transporter -
           Flavobacteria bacterium BAL38
          Length = 419

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 484 YVLTGVVSGFVFLSIPISMYSSFNVPIMQYNYDFHFHFRYVVAFTFWHP-WILQIIFNIK 308
           YV+  ++  FV L I I ++ SF  P  +      F    V+   F +P W LQ I N+K
Sbjct: 94  YVVKAIILFFVLLIISI-VFVSF--PFFKTEKTMFFLGLSVLIGQFINPTWFLQGIENVK 150

Query: 307 WVTLL 293
           W+T+L
Sbjct: 151 WITIL 155


>UniRef50_A2BPK8 Cluster: Putative uncharacterized protein; n=1;
           Prochlorococcus marinus str. AS9601|Rep: Putative
           uncharacterized protein - Prochlorococcus marinus
           (strain AS9601)
          Length = 294

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 98  DYADTFTNTYIINVNCR*IVIDKLLKTKSYLLLAVK 205
           D+ +TFTNTY + +N + + ID  LK   +L+ ++K
Sbjct: 187 DFYETFTNTYHLYLNSKNLDIDFQLKNNKFLVQSIK 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,579,744
Number of Sequences: 1657284
Number of extensions: 11861085
Number of successful extensions: 26753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26736
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)