Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a19
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.66 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.2  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 528 VIANCIKICDSGNSLLKIISSKIEGLLTN 614
           V+ NC K C         +S  +EGLL N
Sbjct: 726 VMLNCWKECPKNRPTFTELSKSLEGLLEN 754


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -2

Query: 713 VSNLKNLTHNYHYIHFISLLFFSPSKCLLQRLFISQQSLDLARYDFQKTVATVTYFYTVC 534
           + N+K L  +++ I  ++  FF P +  L +L++    L  A  D    +  +     + 
Sbjct: 222 LQNIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVL-DLS 280

Query: 533 YN*HVYAIDFQDQRIILRTYW 471
           +N  +Y +DF   R   +  W
Sbjct: 281 HN-SLYELDFDTFRNTKKLQW 300


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 439 PISMYSSFNVPIMQYNYDFH 380
           P+SMY  +   + +Y Y F+
Sbjct: 273 PLSMYYQYPFGLPEYEYSFY 292


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 287 GHEKRYPFYIKNDLEN 334
           G EK+  FYI  ++EN
Sbjct: 108 GEEKKREFYIPPEVEN 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,696
Number of Sequences: 336
Number of extensions: 3434
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)