Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a19
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    31   0.14 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.3  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    28   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.1  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.1  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   9.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.0  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = -3

Query: 445 SIPISMYSSFNVPIMQYNYDFHFHFRYVVAFTFWHPWILQIIFNIKW--VTLLMSCCRKS 272
           S P+   S FN       +   F FR  +    + P+   I+ +  W    LL SCCR+ 
Sbjct: 181 SRPVINVSFFNYIFQNLGWLIRFSFRKSIICCLFTPFSYAILRSYIWRFAALLTSCCRRI 240

Query: 271 AICGVQPSIRLDL 233
           A     P   L L
Sbjct: 241 AYTKTPPKWPLSL 253


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 457 FVFLSIPI-SMYSSFNVPIMQYNYDFHFHFRYVVAFTFWHPWILQIIFNIK 308
           F+ L + I S+YS+F  P++     + F+F   + FT +  WI QII N+K
Sbjct: 470 FIILVVCIASLYSAF-WPVI-----YRFYFISALIFTSYSFWIPQIIQNVK 514


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 586 DMIFKRLLPLSHIFIQFAITNTCMQSTSRIKE*FYVLTGVVSGFVFLSIPISMYSSFNVP 407
           D IF+ LL  +  F      +TC      +++    L G+  G   LS    M+S FN+P
Sbjct: 359 DQIFESLLNFAK-FYSTNTCHTCPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKFNMP 417


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 327 WRIHGCQNVNATTY 368
           W IHGC N +AT+Y
Sbjct: 525 WYIHGCYNGSATSY 538


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 327 WRIHGCQNVNATTYLKWKWKS*LYCIIGTLKLEYIDIG-ILRKTNPLTTP 473
           WR  G Q V+  T    K    L  +I TLKL   D   IL   NPL  P
Sbjct: 441 WRHFGAQYVDCDTDYTNKGVDQLAQVISTLKLNPYDRRIILSAWNPLAIP 490


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 388 DFHFHFRYVVA-FTFWHPWILQIIFNIKWVTLLMSCCRKS 272
           DF ++F  ++  FTF    I+     ++W+TL      KS
Sbjct: 160 DFPYYFNLIIKRFTFVDYEIMNSTLRVRWLTLFAKLSTKS 199


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 460 GFVFLSIPISMYSSFNVPIMQYNY 389
           GF F+S+  +++  F+VP++QY Y
Sbjct: 294 GF-FVSVLDALFECFDVPVVQYMY 316


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 531 IANCIKICDSGNSLLKIISSKIEGLLTN 614
           + NC++I +SG  L  + S   +G++++
Sbjct: 151 VNNCLRIAESGKCLCTVCSCLYQGIISH 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,749
Number of Sequences: 5004
Number of extensions: 56184
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)