Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a19
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    29   3.6  
U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U00051-15|AAZ91344.1|  270|Caenorhabditis elegans Synaptotagmin ...    28   6.3  
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical...    28   8.4  
AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical...    28   8.4  
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    28   8.4  

>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 457 FVFLSIPISMYSSFNVPIMQYNY----DFHFHFRYVVAFTFWHPWIL 329
           F  L++  S+ ++F + ++ + Y    + H H  +   F  W PW+L
Sbjct: 248 FSSLTLISSVSTAFTITVLNFRYRQVQNIHMHPIFYKVFLIWIPWLL 294


>U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical
           protein C14C11.4 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
 Frame = -3

Query: 616 LLVSSPSILLDMIFKRLLPLSHIFIQFAITNTCMQSTSRIKE*FYVLTGVVSGFVFLSIP 437
           LL  +P   LD+ F + LP S   ++    +  M  +  +   FY+      G+VF    
Sbjct: 317 LLTYTPLSQLDISFPQQLPASQFTVELTDCSVYMILSKNMPANFYMANDERIGYVFTP-- 374

Query: 436 ISMYSSFNVPIMQYNYDFH--FHFRYVV-AFTFWHPWILQI-IFNIK 308
            S    F  P++ +    +   HF   V + T +   +L I ++N K
Sbjct: 375 -SFLDDFQTPVLNFTLSSNESRHFSTTVESVTVYQNQLLAINVYNSK 420


>U00051-15|AAZ91344.1|  270|Caenorhabditis elegans Synaptotagmin
           protein 2 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 437 RNTKKNKPTHNTSKYVKLFFDPGSRLHTRVSYSKLYKNM-*QWQQSFENHIE 589
           RN KK     ++  YVK++   G +L ++   S+ YK +   + +SF+  IE
Sbjct: 142 RNLKKMDVGGSSDPYVKIYLHHGRKLLSKKKTSRKYKTLNPYYNESFQFKIE 193


>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
            protein Y51A2D.7b protein.
          Length = 1057

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 234  KSSLIDGCTPQIADLRQQDMRSVTHFILKMIWRIHGCQNVNATT 365
            K  ++ G    I DL Q      TH +L  IWR    + +N  T
Sbjct: 950  KGGILPGRLAPICDLEQFSTCHETHLMLVEIWRFFVVRQLNTAT 993


>AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical
            protein Y51A2D.7a protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 234  KSSLIDGCTPQIADLRQQDMRSVTHFILKMIWRIHGCQNVNATT 365
            K  ++ G    I DL Q      TH +L  IWR    + +N  T
Sbjct: 882  KGGILPGRLAPICDLEQFSTCHETHLMLVEIWRFFVVRQLNTAT 925


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = -2

Query: 584 YDFQKTVATVTYFYTVCYN*HVYA-IDFQDQRIILRTY--WCCEWVCFS*YSYINVFQF* 414
           Y+ Q  V ++ + YT C+    YA + F      LR Y   C  W+C S  + + +    
Sbjct: 90  YEMQLIVQSIIFLYTHCFQSGSYAWVLFNLVLEALRDYSRRCSTWLCLS-IALLRILVMK 148

Query: 413 CSDNAIQLRLPFPLQICSGIHILASMDSP 327
              N   +RL  P+     I I+  ++ P
Sbjct: 149 NPLNQKYMRLVNPIGAFYAISIMVLVNVP 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,697,752
Number of Sequences: 27780
Number of extensions: 301258
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)