Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a19
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 487 FYVLTGVVSGFVFLSIPISMYSSFN 413
           F V   +   F+ +  PI +Y+SFN
Sbjct: 86  FVVNLAICDFFMMIKTPIFIYNSFN 110


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 429 IDIGILRKTNPLTTPVST*NYSLILEVDCIHVLVIANCIKIC 554
           ++ G+  +TNPL   +S  N      +     LV+     IC
Sbjct: 142 VEAGLASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSIC 183


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 429 IDIGILRKTNPLTTPVST*NYSLILEVDCIHVLVIANCIKIC 554
           ++ G+  +TNPL   +S  N      +     LV+     IC
Sbjct: 137 VEAGLASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSIC 178


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 361 VAFTFWHPWILQIIFNIKWVTLLMSCCRKSAI 266
           VA+     WI  I     W+T  + CC  S +
Sbjct: 94  VAYLLLGKWIFGIHLCKLWLTCDVLCCTASIL 125


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 361 VAFTFWHPWILQIIFNIKWVTLLMSCCRKSAI 266
           VA+     WI  I     W+T  + CC  S +
Sbjct: 94  VAYLLLGKWIFGIHLCKLWLTCDVLCCTASIL 125


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 361 VAFTFWHPWILQIIFNIKWVTLLMSCCRKSAI 266
           VA+     WI  I     W+T  + CC  S +
Sbjct: 94  VAYLLLGKWIFGIHLCKLWLTCDVLCCTASIL 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,793
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)