Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28a14
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos... 29 0.78
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 1.8
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 3.2
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 26 4.2
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 26 5.5
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 26 5.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.3
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 9.7
>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 156 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 299
SYN + ++ + F+G+L++ G GY + P + + F S VG
Sbjct: 17 SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 504 MLHTNTMLSY*DYYGPPNNVNSTAITVTS 590
++HTNT +S P N N+T +++T+
Sbjct: 95 LIHTNTSISKPSQTATPQNTNTTQVSLTN 123
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 543 SNPNKTALYLYAAFEILF*LCSSILCT*FSL 451
SNPNK ++Y+Y F LCS L SL
Sbjct: 72 SNPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -3
Query: 230 TSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDS 72
++E +V + G+ D+ NIR +V V E+D RT Q K + +PA D+
Sbjct: 17 SAEQLDVVESGSIDQQ-NIRAWVVRKVKENDKRTSTNQSFKWEAVKPASCLDA 68
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 141 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 251
A Y S+ A I ML+ +F GY I+ F GA G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 212 VPDKGTGDEHANIRICIVTVVMESDARTRKC-QLQKLDDRQPAD 84
+P+K T D + N V V++S R R+ QL+ LDD Q D
Sbjct: 34 LPEKSTSD-YENSGKGTVGQVLQSLQRVRRALQLRSLDDNQSTD 76
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 338 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 180
V+ N + D+RI E V P R+ + RT ++DE+P GD +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 224 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 325
R+ R LH+ F Q RHL+ G+ + R C
Sbjct: 88 RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 249 MQTPSHKRIDIFYSLVGVALFVASGAII 332
M TP K ++F+S V + +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 309 FVASGAIIIDRFQHYGKSEIKDKNLAKASLAIINGAI 419
FV +G IID + G +IKD S A+I +
Sbjct: 10 FVTTGMFIIDEIEFDGGKKIKDIIGGAGSFALIGARL 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,307
Number of Sequences: 5004
Number of extensions: 53093
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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