Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a14
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    30   1.9  
03_06_0067 + 31430669-31430852,31430954-31431099,31431227-314316...    29   4.3  
04_03_0119 + 11485753-11486202                                         28   5.7  
03_06_0653 - 35305279-35306163                                         28   5.7  
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    28   7.6  

>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = -3

Query: 467 VRSLASSLREDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVNNNGTASDEQGNTDQR 288
           V  +   L+   +N   + I  G + L   L++ L    ML+ +N     S  QG+  + 
Sbjct: 467 VVKIGKELKFSLVNLAGNDIVQGNKKLIVALLWQLMRFNMLQLLNR--LRSHSQGSQGKE 524

Query: 287 IEDVDPFV*RSLHYVARGRTSEYDEVPDK 201
           I D D     +    A GRTS+ +   DK
Sbjct: 525 ITDADILKWANSKVKASGRTSQMESFKDK 553


>03_06_0067 +
           31430669-31430852,31430954-31431099,31431227-31431614,
           31431707-31431783,31431922-31432146
          Length = 339

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 458 NYVHKIELHNQKRISNAAYKYNAVLLGLLWSA 553
           +++ K  LHN+K    A+  ++ VL+G LW++
Sbjct: 262 SHLQKYRLHNRKSPGTASASHSIVLVGDLWAS 293


>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 187 SSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSVLPCSSLA 321
           +SP P S TS+ + + P  + CR        S + W  + C  +A
Sbjct: 79  ASPPPSSATSTCTALSPGTSCCRRCRRVSPLSCMLWPEIDCDDIA 123


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 242 ARGRTSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKL 105
           A   +SE +   D   GDE A  R C      E+  R  +CQ +K+
Sbjct: 175 AASSSSEEEAACDDDDGDECAARRWCCAREYFEAKERWEECQFKKM 220


>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 201 FVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGK 359
           F+GY+I FAG  +G  +   ++       SL G+++       +I  F H  K
Sbjct: 351 FLGYIIGFAGVVSGIALYNRTYSNFTTHRSL-GISVLALGSLQVIAFFLHPNK 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,275
Number of Sequences: 37544
Number of extensions: 356300
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)