Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a14
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          29   2.9  
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical...    28   6.8  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 242 LHNADSFTQTDRHLLFAGRC 301
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 242 LHNADSFTQTDRHLLFAGRC 301
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 242 LHNADSFTQTDRHLLFAGRC 301
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical
           protein Y71G12B.26 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 418 IAPLMMANEALAKFLSLISLLP*CWN 341
           + P +  ++AL  FL++++LLP  WN
Sbjct: 163 VTPSLEISQALCGFLAILTLLPVIWN 188


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
            C33B4.3a protein.
          Length = 1110

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 224  EYDEVPDKGTGDEHANIR 171
            +YD+ PD GTGD    IR
Sbjct: 1017 DYDDDPDSGTGDSDGEIR 1034


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,396
Number of Sequences: 27780
Number of extensions: 306007
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)