Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a09
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    29   0.050
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   7.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 0.050
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 457 LLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLP 579
           LLP+ G++E  ++ G ++VP  ++      N   Y T  LP
Sbjct: 33  LLPLFGLKEQPKIEGKVQVPEALKKIYNIQNNFEYDTASLP 73


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 378 HWISNFCRRKASFGC-DDVSSCWRKRMAA 461
           +W S       S  C DD+SSCW + M +
Sbjct: 19  NWSSGPNATLQSSACTDDLSSCWSEDMGS 47


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 578 RTIKLNGMRSSKKIKRQTRWSLVCY 652
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 104 KTKMIAHLKDKKKIRAKKRWSQCMY 128


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 578 RTIKLNGMRSSKKIKRQTRWSLVCY 652
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 418 KTKMIAHLKDKKKIRAKKRWSQCMY 442


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 578 RTIKLNGMRSSKKIKRQTRWSLVCY 652
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 651 KTKMIAHLKDKKKIRAKKRWSQCMY 675


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 578 RTIKLNGMRSSKKIKRQTRWSLVCY 652
           +T  +  ++  KKI+ + RWS   Y
Sbjct: 651 KTKMIAHLKDKKKIRAKKRWSQCMY 675


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,522
Number of Sequences: 336
Number of extensions: 4084
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)