Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a07
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57105 Cluster: PREDICTED: similar to HECT, C2 a...    44   0.004
UniRef50_Q4Q2U6 Cluster: Protein phosphatase 2c-like protein; n=...    36   0.84 
UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111, w...    34   2.6  
UniRef50_UPI0000E47702 Cluster: PREDICTED: similar to ankyrin 2,...    33   7.8  
UniRef50_Q386L9 Cluster: Glycerolphosphate mutase, putative; n=3...    33   7.8  

>UniRef50_UPI0000D57105 Cluster: PREDICTED: similar to HECT, C2 and
           WW domain containing E3 ubiquitin protein ligase 2; n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to HECT, C2
           and WW domain containing E3 ubiquitin protein ligase 2 -
           Tribolium castaneum
          Length = 1285

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
 Frame = +3

Query: 252 ETSEPVSVVGRVPASGCASGDIM--WLLNEPNQPYEDCEQLLCFRYYNGEGEECTAESST 425
           ++S     + R   SG  S  +   W L+ P  P+ DCE+LLCFRYY+G   +  A++ +
Sbjct: 95  DSSSAEECLARQKVSGQESSTMWLHWHLDIP--PHNDCEKLLCFRYYDGSTLDYLAQTDS 152

Query: 426 LPPRFKVDLKNLPNRLKEGMSRKRSGDQVSPFSYNNESFEMNSESPRVEFVAGTSHDIGH 605
           L  +   D   L   +K     K +G         N +F+  SE P ++    +S+ +  
Sbjct: 153 LIIKHPTD--KLKKLIKVKQKHKCNG-------IENNAFQDESEIPTLK----SSNSLED 199

Query: 606 LSENVDKCSISPL 644
           L+  V K +++ L
Sbjct: 200 LNTGVKKKAVNGL 212


>UniRef50_Q4Q2U6 Cluster: Protein phosphatase 2c-like protein; n=3;
           Leishmania|Rep: Protein phosphatase 2c-like protein -
           Leishmania major
          Length = 391

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 465 NRLKEGMSRKRSGDQVSPFSY-NNESFEMNSESPRVEFVAGTSH 593
           +R  +G SR   G    P  Y NNESF++NSE+  V   + T H
Sbjct: 22  SRTPQGKSRVSGGSSCFPSGYLNNESFDLNSETDHVSANSSTCH 65


>UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111,
           whole genome shotgun sequence; n=7; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_111,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 3035

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 321 WLLNEPNQPYEDCEQLLCFRYYNGEGEECT-AESSTLPPRFKVDLK 455
           W+++  +  + DC   L F  YN  G   T ++  TLPP FK++L+
Sbjct: 40  WVVSGASPQFTDCMGTLLFVGYNAFGSRTTVSKIFTLPPHFKINLQ 85


>UniRef50_UPI0000E47702 Cluster: PREDICTED: similar to ankyrin
            2,3/unc44; n=5; Strongylocentrotus purpuratus|Rep:
            PREDICTED: similar to ankyrin 2,3/unc44 -
            Strongylocentrotus purpuratus
          Length = 3841

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 390  GEGEECTAESSTLPPRFKVDLKNLPNRLKEGMSRKRSGDQVSPFSY 527
            GEG +CT   +      ++ LKNLP+R  +G  +    ++ SPF Y
Sbjct: 1964 GEGNDCTQADNANRVADELSLKNLPSRTNDG--KTGGSEEHSPFIY 2007


>UniRef50_Q386L9 Cluster: Glycerolphosphate mutase, putative; n=3;
           Trypanosoma|Rep: Glycerolphosphate mutase, putative -
           Trypanosoma brucei
          Length = 291

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 468 RLKEGMSRKRSGDQVSPF--SYNNESFEMNSESPRVEFVAGTSHDIGHLSENV 620
           R  +G S    GD+VS F  S   E  E+N  S R + + G+S+D+G  S  V
Sbjct: 136 RFPDGESSVDVGDRVSKFFDSLFRERVELNYLSARKQMITGSSNDVGPASFTV 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,288,607
Number of Sequences: 1657284
Number of extensions: 12211908
Number of successful extensions: 37727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37714
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)