Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28a07
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 28 1.3
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 2.3
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 26 4.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.3
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 26 5.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 5.3
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.1
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 7.1
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 9.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.3
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 9.3
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +3
Query: 360 EQLLCFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKEGMSRKRSGD 506
++++ F + + +E + S +K ++N+P+RL+ +SRKRS +
Sbjct: 39 KEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDE 87
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 449 PQESPESTQRGHVQKTKRRPSXXXXXXXXXX*DELRKSSSGVRGRHEPRYRTPQ 610
P PES R Q + +R S E R + G+R RH + R Q
Sbjct: 123 PSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLRDRHIRKVRVSQ 176
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 391 VRAKNARRSHQHCRRVLKLTSRISRIDSK 477
+ A NA R Q +LKL+SRI + S+
Sbjct: 28 IYASNAIRKQQESLNLLKLSSRIDAVSSR 56
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 490 LDMPSLSRFGRFLRSTL--KRGGSVDDS 413
L++P+LSRFG+ + ++L + G S DD+
Sbjct: 5 LNIPALSRFGKSISASLHHQNGSSRDDN 32
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 145 FPWIHLQGRLGEIWPSNQRKSLSVKAAH 228
FPW L +WPS + L +K AH
Sbjct: 310 FPWTRLDPYYNGVWPSIDERPL-LKTAH 336
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 507 QVSPFSYNNESFEMNSESPRVEFVAGTSHDIGHLSEN 617
+V P + N + EM +E +V F + D+G SEN
Sbjct: 8 EVDPNTKNKNAEEMFNELNKVPFFMQSLEDVGDESEN 44
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 540 FEMNSESPRVEFVAGTSHD 596
++ N+E P+V V TSHD
Sbjct: 1260 YQSNTEPPKVTVVGSTSHD 1278
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 250 YTSEVSTNVLLSQRGISSDLMAKFHLNVPVNV 155
Y SEV+ N+L++ + + + LN P N+
Sbjct: 234 YCSEVTGNLLINVMHVDEQYVKRLKLNQPYNI 265
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 40 GFSFIFDVFKFDIVLKSVLFSRLLKTN 120
G+S + + FD VL S++FS+L N
Sbjct: 678 GYSATYYSYIFDTVLASLIFSKLFAGN 704
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 283 RPTTLTGSDVSYTSEVSTN--VLLSQR--GISSDL 191
RP+TL SD+ YT + N VL ++R + SDL
Sbjct: 697 RPSTLFSSDIEYTPTIQLNRQVLKTRRTYNLFSDL 731
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 9.3
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 243 DVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTAESS 422
D +TS VV VPA G I++ P Y CE Y+ EC + S
Sbjct: 154 DAEDTSSDPVVVVNVPA-GYGPRHIVFHKTLP-VCYLICELANRILVYDTNTFECLQDVS 211
Query: 423 TLPPRFKVD 449
TLPP ++
Sbjct: 212 TLPPSMTLE 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,088
Number of Sequences: 5004
Number of extensions: 50048
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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