Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a07
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1080 + 23815232-23817040                                         30   1.8  
06_01_0019 + 208204-208533,208642-208844,208969-209107                 29   2.4  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   5.5  
03_04_0174 - 18044516-18046327                                         28   5.5  
05_04_0357 + 20602830-20602848,20604210-20604250,20605770-206065...    28   7.3  
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913...    27   9.7  

>07_03_1080 + 23815232-23817040
          Length = 602

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 IMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTA 413
           +MW+LNE   PY D EQ L   +  G     TA
Sbjct: 214 LMWMLNELASPYGDVEQKLASYFLQGLFARLTA 246


>06_01_0019 + 208204-208533,208642-208844,208969-209107
          Length = 223

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 435 AAAVLMTPPCILRPHHCSTGSITVVRNLHKAD 340
           AA + M PP +   HH +T  I ++RN+HK +
Sbjct: 141 AAPMAMPPPPL--QHHTTTSLIMMIRNIHKRE 170


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 238  VSTNVLLSQRGISSDLMAKFHLNVPVNVSRGTQILKN*HNL 116
            V+ N L + R  SSDL      N  V VS+G Q+++N  N+
Sbjct: 1768 VTGNQLRNSRQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNV 1808


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 315 IMWLLNEPNQPYEDCEQLLCFRYYNG 392
           +MW+LNE   PY D +Q L   +  G
Sbjct: 210 LMWMLNELASPYGDVDQKLASYFLQG 235


>05_04_0357 +
           20602830-20602848,20604210-20604250,20605770-20606519,
           20606603-20606834,20607412-20607491,20607981-20608106
          Length = 415

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/120 (20%), Positives = 40/120 (33%)
 Frame = +3

Query: 246 VYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTAESST 425
           V E S  +     V  S C+   +   L   + P  D    L   +   +G     ++  
Sbjct: 18  VVEGSCQMKAQDMVSRSSCSKNKVFGSLPVDSIPEIDPSYRLFLEHLREDGNGYVLDAPR 77

Query: 426 LPPRFKVDLKNLPNRLKEGMSRKRSGDQVSPFSYNNESFEMNSESPRVEFVAGTSHDIGH 605
                 V L+   +    G +  +SG  ++  S        NSE P V      S + GH
Sbjct: 78  GDHGSPVFLRYAQDHASNGYANAKSGTNITKSSLRRSHCNQNSEGPGVTSDKAGSANAGH 137


>01_05_0720 -
           24588623-24588658,24588888-24589196,24589449-24591366,
           24591412-24591693,24592027-24592328
          Length = 948

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 421 QHCRRVLKLTSRISRIDSKRACPENEAATKSRPSPITMRALR*TQKV 561
           ++C  + + T+ +S++    AC  NEA    R  PIT  +L+   K+
Sbjct: 617 ENCAEIWRATNLVSKVIGFIACSSNEAQRNRR--PITASSLKLVAKL 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,803
Number of Sequences: 37544
Number of extensions: 345785
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)