Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a07
         (644 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    29   0.13 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   1.6  
AY331407-1|AAQ97588.1|  101|Anopheles gambiae agCP14332 protein.       25   2.7  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 385 TMVRAKNARRSHQHCRRVLKLTSRISRIDSKRACPENEAATKSR 516
           T+ +A+ A  +HQ    + KL   +  ++ KRA  ENE A +S+
Sbjct: 328 TLEQARRADEAHQ--ADIKKLVDELQEVEVKRAAFENEVAGESK 369


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 355 IANNCYASGTTM-VRAKNARRSHQHCRRVLKLTSRISRIDSKRACPENEAATKSRP 519
           IAN  Y  G+T  +    AR +   CR  L   S++   + + A P+  A   S+P
Sbjct: 47  IANVGYRDGSTREIDPLGARATSVDCRTSLAPCSKLFAAEPRVALPKLSATGASKP 102


>AY331407-1|AAQ97588.1|  101|Anopheles gambiae agCP14332 protein.
          Length = 101

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +3

Query: 405 CTAESSTLPPR----FKVDLKNLPNRLKEGMSRKRSGDQVSP 518
           CT  + T P R      +D   + NR+KEG + K     ++P
Sbjct: 11  CTRRNRTAPARNYDTIPIDRWRVGNRMKEGRNVKNGAANLTP 52


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,656
Number of Sequences: 2352
Number of extensions: 13240
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)