Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28a07
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z78062-2|CAB01499.2|  689|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U88176-3|AAB42284.1|  210|Caenorhabditis elegans Hypothetical
           protein F18F11.1 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 76  IVLKSVLFSRLLKTNCVNF*VFVFPWIHLQGRLGEI 183
           I+ K +   RL KT+ +N   FVF +  LQG L EI
Sbjct: 63  ILQKLLTIFRLTKTHALNLGKFVFSYKFLQGALSEI 98


>Z78062-2|CAB01499.2|  689|Caenorhabditis elegans Hypothetical
           protein F16D3.2 protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 156 TFTGTFR*NLAIKSEEIPLCESSTLVDTSDVYETSEPVSVVGRVPAS 296
           TF G +R     K+E + + + +T+ D  + Y+TS    +   VPA+
Sbjct: 459 TFEGEYRYASGSKTEVLKISKITTVGDAPEFYQTSFEHKIFENVPAN 505


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 449 PQESPESTQRGHVQKTKRRPSXXXXXXXXXX*DELRKSSSGVRGRHEPRYRTPQRERR 622
           P  S  S  R   +K+  R S            + R+S S  + R   R R+P RERR
Sbjct: 31  PARSNRSRSRSKDRKSSSRRSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSPSRERR 88


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 325 FLMSPISLMKIANNCYASGTTMVRAKNA 408
           FL+      KI N CY+SGT+ +R + A
Sbjct: 14  FLILGFCECKILNQCYSSGTSCIRFEKA 41


>U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical
           protein C37A2.8a protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
 Frame = +3

Query: 393 EGEECTAESSTLPPRFKVDLKNLPNRLKEGMS----RKRSGDQVSPFSYNNESFEMNSES 560
           EG    A     P  F VD      R++E  +    R R  ++ +P  +       +   
Sbjct: 136 EGNVVLANLDDTPVEFLVDFGTKKRRIEEERAWERERYREQEEAAPIGFGRAPIPEHYHH 195

Query: 561 PRVEFVAGTSHDIGHLSENVDKCSISPL 644
              + V GTSH    L+EN  K  I  L
Sbjct: 196 SEEQRVYGTSHMRLSLNENKRKEEIEKL 223


>U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical
           protein F11D5.1c protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 155 IQGNTNT*KLTQFVFNSLENNTDLSTMSNLKTSKINENPAHA 30
           +  NTN    T  + N+  NN  +++  +LK + +   P HA
Sbjct: 238 VSSNTNVTTTTTTINNNNNNNIHINSSYSLKATTLPPTPTHA 279


>U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical
           protein F11D5.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 155 IQGNTNT*KLTQFVFNSLENNTDLSTMSNLKTSKINENPAHA 30
           +  NTN    T  + N+  NN  +++  +LK + +   P HA
Sbjct: 281 VSSNTNVTTTTTTINNNNNNNIHINSSYSLKATTLPPTPTHA 322


>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 192 KSEEIPLCESSTLVDTSDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLL 371
           KS+     + S   + S++++T  P+  +   P     S D +         +ED +  +
Sbjct: 172 KSDSSDSEQKSDTSEVSNIFDTFSPIKTIDS-PQKTKFSLDFITGYEAQFTAFEDTQPPI 230

Query: 372 CFRYYNGE 395
           CF Y NG+
Sbjct: 231 CFDYCNGK 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,682
Number of Sequences: 27780
Number of extensions: 285843
Number of successful extensions: 933
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)