Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p23
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    31   0.17 
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    29   0.68 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   0.89 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    27   2.7  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    26   4.8  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   4.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.8  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.3  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   8.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.3  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
           LPPGWE+ +    G+ YF + +T   +W+ P
Sbjct: 290 LPPGWEQRYTP-EGRPYFVDHNTRTTTWVDP 319



 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
           LPPGWE   D   G+ Y+ + +T   +WI P
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRP 236



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 458 KEKVLELWPLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAV 595
           ++ V +L PLP GWE        + YF + +T   +W  P  P ++
Sbjct: 338 QQPVSQLGPLPSGWEMRL-TNTARVYFVDHNTKTTTWDDPRLPSSL 382


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 458 KEKVLELWPLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
           ++  +E  PLP GWE    E Y   YF +  T   +W  P
Sbjct: 235 QQVAVEKGPLPAGWEMRLSEDY-HVYFVDHSTKTTTWSDP 273


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
           LPPGWE   D   G+ Y+ + +T   +W  P
Sbjct: 238 LPPGWERRAD-SLGRTYYVDHNTRTTTWTRP 267



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 449 LEHKEKVLELWPLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHPRAV 595
           L   + +  L PLP GWE        + YF + +T   +W  P  P A+
Sbjct: 354 LMQPQSLSHLGPLPSGWEMRLTNS-ARVYFVDHNTKTTTWDDPRLPSAL 401


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 506 VFDEGYGQHYFWNVHTNLVSWIPP 577
           ++D     +YFW+  TN  SW  P
Sbjct: 195 IWDPSQQAYYFWDTLTNTTSWNNP 218


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 482 PLPPGWEEVFDEGYGQHYFWN 544
           PLPPGW E      G  Y+WN
Sbjct: 4   PLPPGWTE-HKAPSGIPYYWN 23


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 296 NENGKD---EPWE-GFVDPVKGHRGCPNKSNIYHECSTFCIKRWKQGKLVPTETYLEHKE 463
           N+ GKD   +P E G VD  K H   P  +      S+    R +   LVP + +  H E
Sbjct: 58  NDQGKDTSLKPGEIGIVDGAKYHYYQPGWTLTGAGLSSVAKTRRELASLVPADKFKLHPE 117

Query: 464 KVLELWP 484
            V  L P
Sbjct: 118 FVKSLHP 124


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 72  SLRYNGNKISEHSKTTKEISTLRKIYNTAKC 164
           SL ++ N++ +HS  TKE   LR +  T  C
Sbjct: 270 SLCFSKNELKKHSNLTKEELLLRCLTLTTSC 300


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 329 FVDPVK-GHRGCPNKSNIYHECSTFCIKRWKQG 424
           +VDP + G +GCP  S I    + FC+  ++QG
Sbjct: 294 YVDPRENGVQGCPEGSPIGAGGACFCVVGFQQG 326


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 371  SNIYHECSTFCIKRWKQGKLVPTETYLEH 457
            S I  EC  F ++RW+Q   +P   Y  H
Sbjct: 2680 SRIIDECMQFSLRRWQQ---LPKRVYQSH 2705


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 215 QNADSTAVASVGQINEEIIAEDYDSKPNENGK 310
           +N D+  +A  G  N+E++ +D D + ++NGK
Sbjct: 91  ENGDAERLAHKGLRNKEVLNDDSDDE-DDNGK 121


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 368 KSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLP 490
           KSN+ H+ ST           +P+ +YL H+ K+   W +P
Sbjct: 150 KSNVEHK-STSQANDAVNKSFLPSVSYLIHQYKIENPWSIP 189


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +2

Query: 485 LPPGWEEVFDEGYGQHYFWN--VHTNLVSWIPP 577
           LP GW   +D  YG +++ N         W PP
Sbjct: 10  LPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,258
Number of Sequences: 5004
Number of extensions: 48612
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)