Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27p23
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 41 6e-04
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 34 0.074
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 34 0.074
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722... 33 0.23
12_01_0794 + 7285100-7285369,7285931-7286338 32 0.40
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 32 0.40
11_03_0142 + 10675764-10675991,10676533-10676943 31 0.52
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 29 2.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 2.1
09_04_0379 - 17094540-17094868,17095354-17095717 29 3.7
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 29 3.7
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 3.7
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 27 8.5
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 41.1 bits (92), Expect = 6e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
LP WEE D+ GQ Y++N +T W PP
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +2
Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHP 586
LPPGW E D G YF+N T W PG P
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAP 221
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 34.3 bits (75), Expect = 0.074
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 338 PVKGHRGCPNKSNIYHECSTFCIKR 412
P K C N SN YHECS +C+++
Sbjct: 9 PGKSRPDCVNSSNPYHECSDYCLRQ 33
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 350 HRGCPNKSNIYHECSTFCIKRWKQGKLVPT 439
H C N SN YH CS FC +R K P+
Sbjct: 48 HPHCINASNPYHACSNFCFRRIIHAKPSPS 77
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
LPPGWEE FD G+ ++ + +T +W P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>06_03_1362 +
29571324-29571564,29571746-29571921,29571972-29572251,
29572949-29573085,29573174-29573401
Length = 353
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 350 HRGCPNKSNIYHECSTFCIKRWKQGK 427
H C N SN YH CS +C KR K
Sbjct: 54 HPDCINASNPYHVCSEYCFKRIADAK 79
Score = 31.9 bits (69), Expect = 0.40
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 344 KGHRGCPNKSNIYHECSTFCIKRWKQGK 427
K C N SN +HECS +C+++ + K
Sbjct: 11 KSRPECINSSNPFHECSDYCLRKIAEAK 38
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 416 KQGKLVPTETYLEHKEKVLELW-PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
K+ K E + H L+L PLP WE+ D G+ Y+ N T SWI P
Sbjct: 55 KKRKHFTWEEPVSHANLELQLNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 497 WEEVFDEGYGQHYFWNVHTNLVSWIPP 577
W ++D Y ++YF+N+ T +W PP
Sbjct: 326 WRVLWDPFYSRYYFYNILTQESTWYPP 352
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 482 PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 577
PLP WE+ D G+ Y+ N T SW+ P
Sbjct: 64 PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 359 CPNKSNIYHECSTFCIKRWKQ 421
CPN N +HEC+ C + K+
Sbjct: 177 CPNAGNPFHECTEHCAAKMKE 197
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 485 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHP 586
LP W + D G Y+WN TN+ + P P
Sbjct: 19 LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>09_04_0379 - 17094540-17094868,17095354-17095717
Length = 230
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 269 IAEDYDSKPNENGKDEPWEGFVDPVKGHRGCPNKSNIYHECSTFCIKRWKQGK 427
I +DS+ +E +G V P++G ++ Y E S C +RWK+ +
Sbjct: 124 ILTKHDSEDVSREAEESTDGEV-PLEGSEELSAEARDYEEVSPGCSRRWKEAR 175
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 428 LVPTETYLEHKEKVLELWPLPPGWEEVFDE--GYGQHYFWNVHT 553
+ P ET +H ++ ++LW + W FD+ Y + Y +++T
Sbjct: 504 VAPRETSEQHHDRTVQLWNVVHEWHTQFDKFMTYQKQYVGSLYT 547
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 317 PWEGFVDPVKGHRGCPNKSNIY 382
P GF DPV GH G P SN Y
Sbjct: 828 PNAGFTDPVGGH-GAPTSSNAY 848
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 497 WEEVFDEGYGQHYFWNVHTNLVSWIPP 577
W+ + E Q Y+WN T SW P
Sbjct: 177 WKTIMHEQSNQCYYWNTVTGETSWEIP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,252,732
Number of Sequences: 37544
Number of extensions: 302613
Number of successful extensions: 775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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