Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p23
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 336 ILSKAIEDALIKVIFIMNVLLFVLKDGSKVNW 431
           IL    +DA I ++   ++L F+ K+G+  N+
Sbjct: 470 ILDDEHDDAFIGIVNQFHILQFITKNGTSNNY 501


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +2

Query: 362 PNKSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLPPGWE 502
           PN   I+++     I RWK G       +L++ E         P WE
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWE 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 557  LVSWIPPGHPRAV 595
            LVSW PP  P  V
Sbjct: 1197 LVSWRPPSQPNGV 1209


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 506 LLPILVARAIALKLSPCVLNMSQSVPVYLASI 411
           L+  L+   + L+LS CV+    +  VY+ S+
Sbjct: 138 LMLYLLFATLPLRLSFCVVLACSTATVYVMSV 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,844
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)