Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p11
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   1.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   1.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   1.3  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 531 QTCIGQHSSNKI*SYSV*EACFYRTKKMIGNGH 629
           Q  IG   S KI + ++ EACF +  K+I  GH
Sbjct: 493 QHFIGAKGSPKIVNSNIDEACFDKVLKLIQEGH 525


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 333 SSNITY*NYKEMESSITSSEIHSVCCASCDC 425
           SSN T  N+K     ++   IH++ C  C+C
Sbjct: 135 SSNYTDLNHKLANYGLSILSIHALMCVECEC 165


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 333 SSNITY*NYKEMESSITSSEIHSVCCASCDC 425
           SSN T  N+K     ++   IH++ C  C+C
Sbjct: 135 SSNYTDLNHKLANYGLSILSIHALMCVECEC 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,055
Number of Sequences: 5004
Number of extensions: 48391
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)