Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p11
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    31   0.93 
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    29   3.8  
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical...    29   3.8  
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    29   3.8  
Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.7  
L25598-7|AAA27938.3|  436|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 629 MPVADHFFGPVKTGLSYTVGSYFI*TVLSNAGLAFRDVF 513
           +P+      P+ TG+SYTVG     T L +AGL     F
Sbjct: 305 LPIDTFTMDPISTGVSYTVGFGQATTTLQSAGLVMTSGF 343


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 65  YIYRDILKIFKYIRCIPIYINTFIALIKNPK 157
           +++  I+  F YI  +P Y N     +KNPK
Sbjct: 261 FMFSPIISPFSYILFVPHYKNVITGKVKNPK 291


>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21b protein.
          Length = 1084

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 481  GNEDSVQEKLRNTSLNAKPALDNTVQIKYDPTVYERPVFTGPKK*SATGIGG 636
            G   +++   R  +L    A   T+Q +YD    + PV++  +K S  G GG
Sbjct: 1024 GGYGTMESNNRAGTLRPASATSQTIQRRYDQVPRDGPVYSSVQKPSPRGGGG 1075


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21a protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 481  GNEDSVQEKLRNTSLNAKPALDNTVQIKYDPTVYERPVFTGPKK*SATGIGG 636
            G   +++   R  +L    A   T+Q +YD    + PV++  +K S  G GG
Sbjct: 1194 GGYGTMESNNRAGTLRPASATSQTIQRRYDQVPRDGPVYSSVQKPSPRGGGG 1245


>Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 159 IFGFLIRAINVFMYIGIHLIY---LNIFNISL*MYSYIKIKFNTIMF 28
           IFG L+  +N+F   G+ + Y   +  F  S  ++S  ++ FN  MF
Sbjct: 25  IFGLLLIILNIFCVRGVFITYRILMITFTCSGILFSTFEVVFNPNMF 71


>Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 159 IFGFLIRAINVFMYIGIHLIY---LNIFNISL*MYSYIKIKFNTIMF 28
           IFG L+  +N+F   G+ + Y   +  F  S  ++S  ++ FN  MF
Sbjct: 25  IFGLLLIILNIFCVRGVFITYRILMITFTCSGILFSTFEVVFNPNMF 71


>L25598-7|AAA27938.3|  436|Caenorhabditis elegans Hypothetical
           protein C06G4.5 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 490 DSVQEKLRNTSLNAKPALDNTVQIKYDPTVY 582
           D V +   N S+N++  LD+  QI YD   Y
Sbjct: 7   DYVDDSYLNQSMNSENGLDSVTQIMYDMKKY 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,027
Number of Sequences: 27780
Number of extensions: 268296
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)