Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p08
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.2  
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 531 RYGREARSPRARCNLRTC*AA*QVRAVSNCTKERNQFQFRPT 406
           RYGR   SP +R + +       +R+ S   KER + ++RPT
Sbjct: 205 RYGRSP-SPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPT 245


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 261  QLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNPNT 395
            Q FD+   + ++ D+ ++ + L  A +    ++DR+ + + NP++
Sbjct: 4305 QAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDS 4349


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 309 QEQEKLIRAGEAYCLALDRERARSCNPNT 395
           +E+E+L++  E    ALD+ER  S  P T
Sbjct: 81  KEKEQLLKEKELRQKALDKERMVSSKPET 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,999
Number of Sequences: 5004
Number of extensions: 50406
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)