Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p08
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286...    31   0.60 
12_02_0678 + 21868038-21868161,21868256-21868587                       29   4.2  
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681     28   5.6  
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...    28   5.6  
01_06_1037 + 33990358-33991263                                         28   7.4  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    27   9.8  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    27   9.8  

>04_04_1264 -
           32227812-32228114,32228199-32228349,32228454-32228691,
           32228786-32228996,32229077-32229270,32229334-32229450,
           32229580-32230522
          Length = 718

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGY-VSDYNA 596
           DCN+   C P G   D   A  RC C DG+  SD+N+
Sbjct: 179 DCNLYASCGPFGYC-DFTLAIPRCQCLDGFEPSDFNS 214


>12_02_0678 + 21868038-21868161,21868256-21868587
          Length = 151

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 384 NPNTGVWLLAETETGFALLCSCLRPGLVT 470
           +P  G  L AE E G  +L SC  P LVT
Sbjct: 59  DPKAGPALAAEAENGSMMLWSCAPPKLVT 87


>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
          Length = 118

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 465 VTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
           +T L++Y+ C +   C   G  +  +    RC C DG+ +  N DT  P
Sbjct: 4   LTNLSIYDPCLLQY-CGDGGSCERSSEFGHRCACHDGFQNLLN-DTSYP 50


>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 225 RCVWSTASKFCDIRVYCL 172
           RC WSTAS+ CD+ V  L
Sbjct: 337 RCSWSTASRGCDVVVSAL 354


>01_06_1037 + 33990358-33991263
          Length = 301

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 388 PTRVCGCWPKLKLVSLFCAVAYGP 459
           P R+ G WP L  +  FC  A GP
Sbjct: 117 PGRIVGGWPALAKMLFFCCGAAGP 140


>08_02_1453 -
           27199228-27200579,27200712-27202646,27202905-27202966,
           27203525-27203545,27204305-27204344,27204345-27204792,
           27204866-27204964,27205071-27205394,27205446-27205574,
           27205657-27205875,27205976-27206194,27206436-27206669,
           27206773-27206943,27207466-27207577,27207955-27208010,
           27208083-27208181,27208901-27209134,27209258-27209311,
           27209363-27209422
          Length = 1955

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 125 QHGRAAH*TAVRNNNRRQYTRMSQNFDAVLHTQRLQSVPRRISQLPVV*RRYNSQDA 295
           Q  RA H TA  +  ++Q  R         H Q+LQ V   +++  V   +  +QD+
Sbjct: 453 QATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDS 509


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +1

Query: 286 SRCVAMTAKNRRSLFEREKPTAWLWIENAPDRVTPTRVCGCWPKLKLVSLFCAVAYG 456
           +RC AM  K  R++   E+    +   N  D++      GC  K +++S+      G
Sbjct: 635 TRCTAMVPKRSRTVVAAEEAQLMIGRRNEKDKLIKMLDSGCDAKHRVISVISVWGMG 691


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,294
Number of Sequences: 37544
Number of extensions: 360306
Number of successful extensions: 1077
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)