Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27p08
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 1.2
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.8
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 29 3.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 5.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 5.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 5.0
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 27 8.7
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 8.7
AF016421-10|AAC25792.1| 473|Caenorhabditis elegans Hypothetical... 27 8.7
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 303 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 449
+G+E E+ + AG+ YC +D R C G W L ET + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 590
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 590
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 590
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
C PHG+ +I+ + +C C GY D N + C
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKC 2635
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
C PHG+ +I+ + +C C GY D N + C
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKC 3219
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
C PHG+ +I+ + +C C GY D N + C
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKC 2635
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
C PHG+ +I+ + +C C GY D N + C
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKC 3219
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
C PHG+ +I+ + +C C GY D N + C
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKC 3219
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 426 GFALLCSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSD 587
G+A +C L G + + E C P C + + CVCDDG+ D
Sbjct: 279 GYACICKPLWTGRNCENPVPEACT-PSPCLNGTCVLNDQYNKFTCVCDDGFFGD 331
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +3
Query: 447 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
CLR + + ED V + +S S +C+C DG+ + ET C
Sbjct: 3634 CLRGECREVIELIEDSWTKVSTDDFSFVSPFHSRSAQCLCPDGF-GGKRCEVETNQC 3689
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +3
Query: 447 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
CLR + + ED V + +S S +C+C DG+ + ET C
Sbjct: 3634 CLRGECREVIELIEDSWTKVSTDDFSFVSPFHSRSAQCLCPDGF-GGKRCEVETNQC 3689
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +3
Query: 447 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
CLR + + ED V + +S S +C+C DG+ + ET C
Sbjct: 3634 CLRGECREVIELIEDSWTKVSTDDFSFVSPFHSRSAQCLCPDGF-GGKRCEVETNQC 3689
>AF016421-10|AAC25792.1| 473|Caenorhabditis elegans Hypothetical
protein F44E7.7 protein.
Length = 473
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 427 VSLFCAVAYGPDLLRSLTCTKIATCPWAARLTAVSTISTALRSG 558
V+ + V YGP LR + + WAA L VS SG
Sbjct: 291 VAFYVLVLYGPTYLREVLHFDVKGTGWAAALPFVSCAIVKFASG 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,712
Number of Sequences: 27780
Number of extensions: 312067
Number of successful extensions: 953
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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