Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p07
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.3  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   2.9  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   2.9  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   3.8  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   5.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   6.7  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   6.7  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   8.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.9  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   8.9  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 442 GRACSRCLKRISIRRC 489
           GR CS CLKR +I+ C
Sbjct: 36  GRPCSNCLKRSTIQSC 51


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +1

Query: 226 RELSFCYKITKIVK*RMAEGNGEISYDEVAG-KDSDVGRTEDYHKLIE------YGLDPK 384
           REL   Y+ T +     AE +GE+   +VA      +   +D  K++E        LD +
Sbjct: 700 RELEEQYESTLVSSYENAEADGEVKDGDVAAVTKQTIESLKDGEKILEAITIGIEDLDQE 759

Query: 385 VAAKLDDIYKTGKASARR 438
           +  +LD +   GKA   R
Sbjct: 760 IQYRLDLLKSPGKARGPR 777


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 67  PKIVFISNHRNSITRAFAF*NSPSPGWNEECTI 165
           PK+ +I NHR      +   N+P P WN E  I
Sbjct: 105 PKVYWIFNHRR-----WCLENAPYPNWNYEMMI 132


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +1

Query: 286 NGEISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKASARRVGRACSRC 462
           NGE S + V  + S++G+TE    L++Y              +  +      G+ CS C
Sbjct: 285 NGEGSNESVIMRLSEIGKTETASPLLQYEWYTNETEAEAKARRDKRLGELLTGKHCSEC 343


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 503 QEHLKHRRMEILLRHLEHARPTLRALAFPVL*MSSSLAATLGSKPYS 363
           +E  + RR E  L   E  R    +   P     +SLA+ LGSKP S
Sbjct: 230 KEFFETRRKEFQLERREQNRNQKSSKQRPFHKPGNSLASRLGSKPKS 276


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 391 AKLDDIYKTGKASARRVGRA 450
           AK+DD+  T K SAR+ G++
Sbjct: 618 AKVDDLKSTSKESARQFGKS 637


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  PYLSRPQLAKLIGPKLCSSLIIEI 100
           PY S+P   KL+G K  S L I++
Sbjct: 580 PYASQPVTLKLVGGKPISQLYIDM 603


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 437 ELDERALDALKEFPSDGALSVLGQ 508
           EL+E  LDAL++   D A SVL +
Sbjct: 259 ELNEEQLDALRKKDKDTAASVLAE 282


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 452 ALDAL-KEFPSDGALSVLGQFL 514
           AL+AL +EFPS G L    QF+
Sbjct: 19  ALEALVREFPSSGILITFSQFI 40


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -1

Query: 387 YLRIQAILNKFVVIFCPANIRILPSYLIIGYFSIALRHSLFYNFCNFVTK*QFSNRPK 214
           Y+ +  ++  F+ +F  ++  ILP  +++    + +  SL+Y F + +   QF N P+
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHGL---QFINWPR 568


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 116 SLFEIRLHPDGMRSA 160
           S+F I +HPDG R A
Sbjct: 20  SIFSIHIHPDGSRIA 34


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 52  SKINRPKIVFISNHRNSITRAFAF*NSPSPGWN--EECTILLF 174
           +++N P I+ +++  +++   +   +SPS G N  EE  IL F
Sbjct: 222 NRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKF 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,483
Number of Sequences: 5004
Number of extensions: 44720
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)