Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p07
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    30   1.3  
01_06_0514 + 29955129-29955796,29955903-29956023                       28   5.1  
09_02_0141 - 4889020-4889191,4889401-4889675                           27   6.8  
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733...    27   8.9  

>08_02_1442 + 27120604-27120890,27121029-27121166,27121280-27121382,
            27121877-27122036,27122927-27123114,27123203-27124770,
            27124882-27125869,27126595-27127098,27127347-27127433,
            27127753-27127821,27128012-27128041
          Length = 1373

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 373  LDPKVAAKLDDIYKTG--KASARRVGRACSRCLKRISIRRCFKC 498
            L P    K+ D+Y  G  KAS         RCLKR+ I RC +C
Sbjct: 962  LKPHSKLKILDLYGYGGSKASVWMRDPQMFRCLKRLIIERCPRC 1005


>01_06_0514 + 29955129-29955796,29955903-29956023
          Length = 262

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 283 GNGEISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDD 405
           G+G ++ DE+A    D   +E+Y  +IE+G +P+    L D
Sbjct: 132 GSGSVTLDEIA----DFALSEEYTCVIEHGPNPRTTHILGD 168


>09_02_0141 - 4889020-4889191,4889401-4889675
          Length = 148

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 96  KFNNPRIRFLKFAFTRME*GVHNLIVSL 179
           KF+N R+R L   FT ++  ++N+I+SL
Sbjct: 105 KFSNKRLRDLGLEFTPIKESLYNMILSL 132


>12_01_0800 -
           7331444-7331539,7331617-7331742,7331830-7331907,
           7332515-7332747,7332832-7332871,7333016-7333070,
           7333158-7333345,7333416-7333475,7333686-7333769,
           7334817-7334903,7335178-7335246,7335354-7335410
          Length = 390

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 301 YDEVAGKDSDVG-RTED-YHKLIEYGLDPKVAAKLDDIYKTG 420
           YDE+  K+S +  + ED  HK  E G+D K+    DD  K G
Sbjct: 348 YDELLSKNSSLKEKLEDKQHKTDEAGVDNKLQHSGDDSQKKG 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,411
Number of Sequences: 37544
Number of extensions: 293392
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)