Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p07
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   10.0 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   10.0 

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 7   RRADRGAAISVSATTSKINRPKIVFISNHRNS 102
           ++ ++    S + TTS +   K   + NH NS
Sbjct: 316 QKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNS 347


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 376 DPKVAAKLDDIYKTGKASARRVGRACSRCLK 468
           D  +   L D+YK G      VGR  +  LK
Sbjct: 243 DKALRLPLQDVYKIGGIGTVPVGRVETGILK 273


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +1

Query: 178 CFICLNIFCFFVFRTIREL 234
           CF+C N+  + ++  I ++
Sbjct: 415 CFVCFNLMYWIIYLHISDV 433


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +1

Query: 178 CFICLNIFCFFVFRTIREL 234
           CF+C N+  + ++  I ++
Sbjct: 415 CFVCFNLMYWIIYLHISDV 433


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 376 DPKVAAKLDDIYKTGKASARRVGRACSRCLK 468
           D  +   L D+YK G      VGR  +  LK
Sbjct: 186 DKALRLPLQDVYKIGGIGTVPVGRVETGVLK 216


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 376 DPKVAAKLDDIYKTGKASARRVGRACSRCLK 468
           D  +   L D+YK G      VGR  +  LK
Sbjct: 243 DKALRLPLQDVYKIGGIGTVPVGRVETGVLK 273


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 143 DGMRSAQSYCFTVSYV*TSFVFLFFGRLEN 232
           D  R      FT++ V    +  F GRL N
Sbjct: 58  DWFRKNMLLVFTIAAVLVGLILGFLGRLAN 87


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 228 RIVILLQNYKNCKIKNGGGQWR 293
           R++ LL +     I +GG  WR
Sbjct: 22  RMLALLVSLHRLSIYSGGSDWR 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,569
Number of Sequences: 438
Number of extensions: 3161
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)