Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27p06
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 117 1e-27
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 102 3e-23
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 99 2e-22
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 2.5
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.3
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 3.3
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.6
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 25 7.6
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 117 bits (282), Expect = 1e-27
Identities = 52/138 (37%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +3
Query: 150 NVTELATRHGYQCEEHNVVTEDGFVLTVFRVSSGQRCSRTQIPVLLVHGLLQSADSWLDA 329
N+ E+ GY+ EEH V T+D F+L + R++ ++ + V HGL+ +++ W+
Sbjct: 74 NIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQSQHKREVVYCHHGLMTNSELWVAV 133
Query: 330 GPGS-GLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAIL 506
L ++L ++ +DVWL N RGN YSR+H+T P D +WNFS D++ FD+P +
Sbjct: 134 NESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDIPDTV 192
Query: 507 DYVLDRSRADVLNYVGFS 560
DY+L + + LNY+GFS
Sbjct: 193 DYILRETGREKLNYIGFS 210
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 102 bits (245), Expect = 3e-23
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Frame = +3
Query: 150 NVTELATRHGYQCEEHNVVTEDGFVLTVFRVSS---GQRCSR--TQIPVLLVH-GLLQSA 311
++ E+ GY E+H V TED ++L + R+S G+ S ++PV+ H GLL ++
Sbjct: 80 DIREMCKISGYYVEDHLVRTEDDYILCIHRISKDSPGRIGSPHPKKLPVVYCHHGLLMNS 139
Query: 312 DSWL-DAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYF 488
+ W+ + P + L + L + +DVWL N RGN YSR+HL D +D +W+FS D+ +
Sbjct: 140 EVWVCNVDPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFAQY 198
Query: 489 DLPAILDYVLDRSRADVLNYVGFS 560
D+P +DY+L S L Y+GFS
Sbjct: 199 DIPDTIDYILKTSGQTKLTYIGFS 222
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 99 bits (238), Expect = 2e-22
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Frame = +3
Query: 159 ELATRHGYQCEEHNVVTEDGFVLTVFRVSSGQRCSRTQI----PVLLVHGLLQSADSWL- 323
+L HGY EEH V T DG++L + RV ++ ++ PVL +HGL+ +++SW+
Sbjct: 77 DLCALHGYDLEEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFIHGLMMNSESWVC 136
Query: 324 DAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAI 503
+ + + L + +DVWL N RGN YS +++ + +W+FS D I FD+P+I
Sbjct: 137 NLKKEDAIPFALVEQGYDVWLGNLRGNKYSIKNIKFS-SQNPKFWDFSLDSIAIFDIPSI 195
Query: 504 LDYVLDRSRADVLNYVGFS 560
+ Y+L + D ++ VGFS
Sbjct: 196 VKYILSVNSFDSISLVGFS 214
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 387 SNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLP 497
SNTR Y+ DS A WN+ + +G LP
Sbjct: 404 SNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLP 440
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 343 PEPGPASSQESALC-SRPCTSSTGICVREHRWPLDTRKTVSTNPSSVTT 200
P P+SS SA S T S V EH P + + +P+S+T+
Sbjct: 155 PANSPSSSSSSASTKSTATTQSADYVVAEHFAPQRNDEQLGNSPASITS 203
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.3
Identities = 23/94 (24%), Positives = 39/94 (41%)
Frame = +3
Query: 258 CSRTQIPVLLVHGLLQSADSWLDAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDP 437
C IP+L GLLQ+ ++ G G + V L++ + + R L +
Sbjct: 93 CKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPRNFLEIVQ 152
Query: 438 DSDAAYWNFSADEIGYFDLPAILDYVLDRSRADV 539
+ +FS D G D L++ LD+ D+
Sbjct: 153 SLNR---DFSID--GQCDAQEFLNFFLDKLHEDL 181
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 7.6
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 375 DVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAILDYVLDRSRADVLN 545
DV SN ++ + L +DPDSD F D + PA D LD A + N
Sbjct: 152 DVKSSNICSSH-TPTQLLVDPDSDCCLLRFLTDMMAIIPYPANED--LDMEEAAIEN 205
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 219 FVLTVFRVSSGQRCSRTQIPVLLVHGLLQSADSW 320
F +++ +VS+ + C++ PV L + Q DS+
Sbjct: 844 FAISLMKVSTFESCTKELPPVTLPENIRQHLDSY 877
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 287 EQHWDLCTRAPLAARHAENGQHESVLRDHVMLLALIPVSGR 165
EQ + T+ L AE+GQ+ ++ D +M L + SGR
Sbjct: 191 EQQMEYITK--LGTIFAEDGQYRLLIVDSIMALFRVDYSGR 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,087
Number of Sequences: 5004
Number of extensions: 31808
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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