Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27p02
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0603 - 4350124-4350590,4350995-4353608                           29   3.5  
05_01_0051 - 345125-345693,345833-346925                               28   8.1  

>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 174 SSQSPRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYRRLGVLEQAQRRLSGG 7
           S + P ++ SL+ L Q+     +  G I      +GI L RRL  L+ +  RLSGG
Sbjct: 116 SGEIPAELASLSRLTQLSLTGNRLEGAIP-----AGIGLLRRLYFLDLSGNRLSGG 166


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 85  HFYAATTLLYAERNLF 132
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,262,538
Number of Sequences: 37544
Number of extensions: 361728
Number of successful extensions: 963
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)