Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27o24
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 159 2e-40
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 149 2e-37
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 78 6e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 65 5e-12
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 44 1e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 6e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 37 0.001
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 37 0.002
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 35 0.008
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 34 0.014
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.014
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.018
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 30 0.22
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 29 0.29
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 0.38
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 28 0.67
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 28 0.67
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 1.2
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 3.6
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 26 3.6
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 6.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.3
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 8.3
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 8.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 8.3
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 8.3
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 8.3
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 25 8.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 159 bits (386), Expect = 2e-40
Identities = 72/83 (86%), Positives = 77/83 (92%)
Frame = +3
Query: 246 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 425
K S++F NKEMRILMLGLDAAGKTTILYKLKL QSV TIPTVGFNVETVTYKN+KFNVW
Sbjct: 11 KPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVW 70
Query: 426 DVGGQDKIRPLWRHYYXGTQGLI 494
DVGGQDKIRPLWRHY+ GT+GLI
Sbjct: 71 DVGGQDKIRPLWRHYFTGTKGLI 93
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 149 bits (361), Expect = 2e-37
Identities = 64/87 (73%), Positives = 76/87 (87%)
Frame = +3
Query: 234 VNMGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVK 413
+++ KL +FG +EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV Y+N+
Sbjct: 3 LSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNIS 62
Query: 414 FNVWDVGGQDKIRPLWRHYYXGTQGLI 494
F VWDVGGQDKIRPLWRHY+ TQG+I
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGII 89
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 78.2 bits (184), Expect = 6e-16
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 449
+E+R+L+LGLD AGKTTIL K L + V + PT GF + T+ + ++F +WD+GGQ +
Sbjct: 15 REVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTL 73
Query: 450 RPLWRHYYXGTQGLI 494
R W++Y+ T+ +I
Sbjct: 74 RNFWKNYFESTEAII 88
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 65.3 bits (152), Expect = 5e-12
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +3
Query: 270 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 449
NK ++L LGLD AGKTT+L+ LK + PT+ E + NV+F +D+GG +
Sbjct: 18 NKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQA 77
Query: 450 RPLWRHYYXGTQGLI 494
R LWR Y+ G++
Sbjct: 78 RRLWRDYFPEVNGIV 92
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 279 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 443
+++L++G GK+ +L + + I T+G F + T+ K +K +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 444 KIRPLWRHYYXGTQGLI 494
+ R + YY G G++
Sbjct: 70 RFRTITTAYYRGAMGIL 86
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 282 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQDK 446
++L++G GK+ +L + + I T+G + + T+ K VK +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 447 IRPLWRHYYXGTQGLI 494
R + YY G G+I
Sbjct: 70 FRTITSSYYRGAHGII 85
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 38.3 bits (85), Expect = 6e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 402 KNVKFNVWDVGGQDKIRPLWRHYYXGTQGLI 494
K +K +WD GQ+K R + R+YY G G +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAV 90
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 37.1 bits (82), Expect = 0.001
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 282 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 446
+ +++G GK+ +L + + ++ + T+G T + K +K +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 447 IRPLWRHYYXGTQGLI 494
R + YY G G +
Sbjct: 72 YRAITSAYYRGAVGAL 87
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +3
Query: 282 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETV----TYKNVKFNVWDVGGQDK 446
+++++G GKTT + + G+ I T+G V + + + FNVWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 447 IRPLWRHYY-XGTQGLI 494
+ L YY G G+I
Sbjct: 71 LGGLRDGYYIQGQCGII 87
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 34.7 bits (76), Expect = 0.008
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 264 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNVETVTY----KNVKFNVWD 428
F ++ +++ LG + GKT+++ + Q T T+G + + T + V+ +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 429 VGGQDKIRPLWRHY 470
GQ++ R L Y
Sbjct: 67 TAGQERFRSLIPSY 80
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.014
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Frame = +3
Query: 129 ISNHQCDRIVATNQQSGMVPV--SWRRLVLLCG*GKLVNMGKLLSKIFGNK-----EMRI 287
+S+ Q T Q+ VPV +W +VL GK N+ ++ GN ++++
Sbjct: 21 LSDTQTSNSSTTGSQNARVPVLENWLNIVLR---GKPQNVESSGVRVKGNSTSGGNDIKV 77
Query: 288 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 410
L+LG +GKTTI+ +++L S V + ++N+
Sbjct: 78 LLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENI 118
Score = 29.5 bits (63), Expect = 0.29
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 363 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYXGTQGLI 494
I T G + ET + +DVGGQ R W H + L+
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALL 262
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 33.9 bits (74), Expect = 0.014
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 270 NKEMRILMLGLDAAGKTTILYKLKLG---QSVTTIPTVGFNVETVTYKN--VKFNVWDVG 434
N +++ M+G + GKT+++ G + T V F +T++ +N + F++WD+G
Sbjct: 8 NVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLG 67
Query: 435 GQ 440
GQ
Sbjct: 68 GQ 69
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.018
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +3
Query: 282 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVET---VTYKNVKFNVWDVGGQ--- 440
+++++G A GKT++L LG T +PTV N + V K+V+ +WD GQ
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 441 DKIRPL 458
+++RP+
Sbjct: 70 ERLRPM 75
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 29.9 bits (64), Expect = 0.22
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 279 MRILMLGLDAAGKTTILYK-LKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 443
+++++LG GKT+I+ + + S T+G + T V K V +WD GQ+
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 444 KIRPLWRHYYXG 479
+ + L +Y G
Sbjct: 69 RFQSLGVAFYRG 80
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.5 bits (63), Expect = 0.29
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 282 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYK---NVKFNVWDVGGQD 443
++++LG A GK++++ + Q T+G F +T+ +VK +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 444 KIRPLWRHYY 473
+ + L YY
Sbjct: 76 RYKSLAPMYY 85
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.1 bits (62), Expect = 0.38
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 281 HLLVTEYLREKLPHVDELAST 219
H+L T+YLR LP+VD+L T
Sbjct: 369 HVLSTDYLRGFLPYVDQLLDT 389
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.3 bits (60), Expect = 0.67
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 207 VLLCG*GKLVNMGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGF 380
+LL G +L L++KI+ + ++ LD G T +L K + + PT F
Sbjct: 247 ILLEGYAELPTYRMLMAKIYEEHKDPSTIMALDGVGTTALLVKASVHRDGALFPTFPF 304
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 28.3 bits (60), Expect = 0.67
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +3
Query: 279 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 443
+++++LG GKT ++ + K + F + V K V +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 444 KIRPLWRHYYXG 479
+ + L +Y G
Sbjct: 69 RFQSLGMAFYRG 80
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 273 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 374
KE+R+++ G GK++++ L +VT+IP V
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 369 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYXGTQGLI 494
T+G + + T +++ ++DVGGQ R W + + +I
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSII 220
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 488 ALSAXVVMPPQRPYFVLPPDVPDIKFDVLIRYGFNVEAHCRYCRDR 351
ALSA ++ P + ++P D P+ K YG V + RY DR
Sbjct: 90 ALSAKILGIPAK--IIMPLDAPEAKVAATKGYGGQVIMYDRYKDDR 133
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 285 ILMLGLDAAGKTTILYKLKL 344
I+M+GL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 42 CCVFCFDCFEW 74
C V CFDC EW
Sbjct: 149 CKVQCFDCHEW 159
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 272 VTEYLREKLPHVDE 231
VTEYLRE+L H ++
Sbjct: 440 VTEYLREQLKHTED 453
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 282 RILMLGLDAAGKTT---ILYKLKLGQSVTTI-PTVGFNVETVTYK-NVKFNVWDVGGQD 443
++L++G +GK++ I++ + + + T+ V + N+ N+WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQE 62
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 141 GGCLSNSMHT*PHDNRKLQCLTSTQ 67
G CLS M H N ++ CL+++Q
Sbjct: 526 GPCLSFLMKLSTHKNERIACLSASQ 550
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 295 WDSTLLERLPFYIS*N 342
WDS LL PFY+S N
Sbjct: 35 WDSNLLSVNPFYLSVN 50
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 305 VESQH-QYSHLLVTEYLREKLPH 240
V S+H +Y HL T LR+K PH
Sbjct: 246 VVSEHARYKHLPFTATLRKKSPH 268
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 8.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 193 AGDVLYYCVVEASSSTWGSF 252
AG++++ C+V S WG F
Sbjct: 51 AGNLIFACIVIESPGFWGKF 70
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 8.3
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -2
Query: 317 LSSSVESQHQYSHLLVTEYLREKLPHVDELASTTQ*Y--KTSPAHRNHSTLLVSCDDSIT 144
LSSS+ + S L + Y +P L S++ +SP + S+ + S ++
Sbjct: 650 LSSSISTIPISSSL--STYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVS 707
Query: 143 LVVAYLTACTHSHMTIANYNV*HPLKTVKTKNTAQTTSTIRTL 15
A L+ THS +++ + + T +T T S+ TL
Sbjct: 708 TYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTL 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,519
Number of Sequences: 5004
Number of extensions: 40832
Number of successful extensions: 156
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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