Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27o22
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 0.82
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||... 28 0.82
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 28 1.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.4
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 2.5
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 5.8
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 5.8
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 5.8
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 7.7
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 7.7
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.7
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 197 NCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMK 376
N K VS+ +K+ K+ Y E + S + V K + L P + TK+G+ Q+I++
Sbjct: 646 NKKRKVSQKREKQKKFLYDEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIE 705
Query: 377 S 379
+
Sbjct: 706 N 706
>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 125 YVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKY 244
++LEQ Q++ +D + LK + K V +H+D + Y
Sbjct: 11 HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTY 50
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +2
Query: 188 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQL 367
KY CK +S +Y + +S +P +AP+ + + P + L+ + +L
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERL 231
Query: 368 IMKSK 382
+ + K
Sbjct: 232 LAQGK 236
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 338 LITKSGVIQLIMKSKLPYAIELQEWLL 418
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 466 CGVVLARA*HLRNYFF*KPFL*FYGVRKLAL 374
CG++L A L YFF L +G+RK+AL
Sbjct: 86 CGLILTLA--LEVYFFSTALLKLFGLRKIAL 114
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 419 EEVIPQVLCTGKYDPAIKQQEEKNKQL 499
+ V+ +++ GKY IK+Q +NKQL
Sbjct: 551 KRVLQRLIIEGKYTYYIKRQGTQNKQL 577
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 206 DAVSRHVDKKYKYTYSESGARLPPS-APNSVAKQGDPLYLQPHTVLITKSG-VIQLIM 373
+ ++ + K Y+ + G P + +PN +A PL P L KSG V+++++
Sbjct: 58 ELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILL 115
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 449 GKYDPAIKQQEEKNKQLVTKLIATF 523
G+++ IKQQEE K L +K + F
Sbjct: 442 GEFENLIKQQEEAKKSLWSKRFSRF 466
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 179 SSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVA 298
+++ Y +C A RH SE+G P S N ++
Sbjct: 154 TAVPYDSCLPAPDRHTPSSASSRASETGTTSPQSMRNQIS 193
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 318 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 139
Y+GS T G P ++YV + +T T ++ +P S+ T LT G P
Sbjct: 248 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 300
Query: 138 CSSTYL 121
+ T +
Sbjct: 301 SNGTVI 306
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 318 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 139
Y+GS T G P ++YV + +T T ++ +P S+ T LT G P
Sbjct: 326 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 378
Query: 138 CSSTYL 121
+ T +
Sbjct: 379 SNGTVI 384
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 318 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 139
Y+GS T G P ++YV + +T T ++ +P S+ T LT G P
Sbjct: 404 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 456
Query: 138 CSSTYL 121
+ T +
Sbjct: 457 SNGTVI 462
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 318 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 139
Y+GS T G P ++YV + +T T ++ +P S+ T LT G P
Sbjct: 482 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 534
Query: 138 CSSTYL 121
+ T +
Sbjct: 535 SNGTVI 540
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 318 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLLAMSLATNLTCGFP 139
Y+GS T G P ++YV + +T T ++ +P S+ T LT G P
Sbjct: 560 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP------GSVTTTLT-GAP 612
Query: 138 CSSTYL 121
+ T +
Sbjct: 613 SNGTVI 618
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 239 KYTYSESGARLPPSAPNSVAKQGDPLYLQP 328
+Y Y ARLP AP AK G ++P
Sbjct: 83 RYRYLNKYARLPHEAPIKEAKLGPDTNIRP 112
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 239 KYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMKSKLP 388
K++YS++ +L PNS Q L LQ + L+ G I + + SK P
Sbjct: 66 KFSYSDALKKLRIDEPNSTVNQHHQLNLQ-YEALMNDLGGINIFL-SKPP 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,107
Number of Sequences: 5004
Number of extensions: 45008
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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