Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27o22
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical pr... 29 1.7
EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short i... 29 1.7
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 29 1.7
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 29 1.7
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 29 1.7
AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhes... 29 1.7
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 29 1.7
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 29 3.1
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 29 3.1
U97592-4|AAB52872.1| 450|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z29117-11|CAA82382.1| 307|Caenorhabditis elegans Hypothetical p... 27 9.3
U64861-2|AAB04994.1| 117|Caenorhabditis elegans Hypothetical pr... 27 9.3
U53139-7|AAK18935.1| 235|Caenorhabditis elegans Hypothetical pr... 27 9.3
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 153 TCGFPC-SSTYLSVNVSWPNLNCPILT*AILI 61
TCG C +STY N +P LNC +T A+ +
Sbjct: 104 TCGLCCQTSTYSCQNAPFPRLNCASVTKAMCL 135
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 200 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 322
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical
protein C17G1.6a protein.
Length = 765
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 200 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 322
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short
isoform protein.
Length = 500
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 226 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 116
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
isoform protein.
Length = 1187
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 226 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 116
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 200 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 322
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 226 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 116
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform b protein.
Length = 496
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 226 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 116
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 226 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 116
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 150 CGFPC-SSTYLSVNVSWPNLNCPILT 76
CG C +S+Y NV++P LNC +T
Sbjct: 105 CGLCCQTSSYSCPNVAFPRLNCATIT 130
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 227 PRVCLQRLYNFHILNCW 177
PR+C +LYN IL CW
Sbjct: 722 PRMCPSKLYNEQILPCW 738
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 227 PRVCLQRLYNFHILNCW 177
PR+C +LYN IL CW
Sbjct: 752 PRMCPSKLYNEQILPCW 768
>U97592-4|AAB52872.1| 450|Caenorhabditis elegans Hypothetical
protein C14A11.5 protein.
Length = 450
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +2
Query: 191 YGNCKDAVSRHVDKKYKYTYSESGARLPPSAP-NSVAKQGDPLYLQPHTVLITKSGVIQL 367
YGNCK+++ V++KY + + L +S + + + + + + + K+ +++
Sbjct: 322 YGNCKESIRSRVEEKYNQLFIDRIRELTEKLEWSSESPEKNRQFTKTDELTVVKAHIVRK 381
Query: 368 I---MKSKLPYA---IELQEWLLEEVIPQV 439
+ KS P A E+ + L E+ P +
Sbjct: 382 LDYWKKSTQPQAAHYTEMYQLLFEKCGPSI 411
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 198 FPYFKLLAMSLATNLTCGFPCSSTYLSVNVSW 103
FPY++ L TNLTC +S ++ VNVS+
Sbjct: 241 FPYYEYLCTHYWTNLTC---YTSIFVFVNVSF 269
>Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical
protein F46G10.2 protein.
Length = 607
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 194 GNCKDAVSRHVDKKYKYTYSESGARLPPSAPNS-VAKQGDPLYLQPHTVLITKSGVIQLI 370
G C + K K+ S A++ P AP S A + L L P + +GV+ L+
Sbjct: 292 GGCACVNCNCITDKTKFFVIPSLAKVTPPAPTSPTAVHHETLILSPLQIFFIFTGVVSLL 351
Query: 371 M 373
+
Sbjct: 352 L 352
>Z29117-11|CAA82382.1| 307|Caenorhabditis elegans Hypothetical
protein C48B4.11 protein.
Length = 307
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 519 VAISLVTNCLFFSSCCLIAGSYLPV 445
V ++V + +FF CCL+A Y PV
Sbjct: 214 VGQAIVFSVIFFLLCCLLAYEYSPV 238
>U64861-2|AAB04994.1| 117|Caenorhabditis elegans Hypothetical
protein C47D2.1 protein.
Length = 117
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 258 RGRDYRPRLQTAWQSKAIRCICSRIQCLL 344
R + R Q+ WQS C S +QCLL
Sbjct: 73 RNQILEKRPQSPWQSPLRNCYLSPVQCLL 101
>U53139-7|AAK18935.1| 235|Caenorhabditis elegans Hypothetical
protein F18E3.10 protein.
Length = 235
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 516 AISLVTNCLFFSSCCLIAGSYLPVHST*GITSSKSHSCNSMAY--GSLLFIIN*ITPDLV 343
A+ +TN +F C + ++P + K H C ++Y +N T D V
Sbjct: 115 ALFYLTNIVFLQGCMIFIFWHMPTQKEGRMNVKKDHPCIPLSYVENPNFLHLNSPTSDTV 174
Query: 342 ISTV 331
+ TV
Sbjct: 175 LVTV 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,443
Number of Sequences: 27780
Number of extensions: 264321
Number of successful extensions: 790
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -